Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01513 ATGGCAGGCGGTGAATCGCCTTTCTATGGGCTCAGTCCCATAGATAATGATTTGGAAACTGCTGCTGCAAGTGTGTGTGAATCCCACCATGCATGCCTTTCTGATACTCATGGTTGGGAGAAATCTTTCGGCATTGCTTCTCTTTTCGCAAAGATCGAGGACCTACAATTCGATCGAAAGATTGGACCAGTAAAAGCACTTTCTGAACAATTTGCTGAGTTTTCCGAGTTCCCTAAATTGTTCAACAACGCAGGAAATGATGATCCTCAACGTTGTACAGAGCAACAGTCTATACCTTTGGCGTCGAATGAGCTGTTGGAGAATTATGCTAGAAAGTTCAGAGGATCGTTGGAAGGAACAAGAGCTAAGCCAATTGATCAAGAGCTGACATGCATAGGAGGAGAAGACAAACAACTTTCGACTGAACAAATAATGAGGATAGCTGGAGCAAGGTTTGTTCAGTCCTTTTCACCAACATCTGATGATACTCCAAATGGTAAATACCCGTTTGGAATTTCTTTCTTTGAGTCTGAACTGCCTACTGAAGTGCTCAAAGATGTGGAGCTCGCAGAAACTCTTCTTCTTTCAGCTCAGGAAGTGGGAAACGAACAGTATGGTGCTGCAACAAAACTACTTGATCAGTGCGATTCATTGTCTTCTAACACAGAACATCCTGTTCAAAGGGTTGTCTTCTATTTCTCTGAAGCTCTACGGGAAAGAATTGACAGAAAAACAGGAAAAACTACATCAAAAGGTTTGGCTAAAAAACAGACAAGAAATCTTGATGAGGCAATGATGAATTCTCCCACTTCACTGGCATTTCATGAGAAGCTTCCGTTCTCTCAAATCCTACAATTTGCTGGGATTCAAGCCATTATAGAGAGTATGGCTAATGCTAAGAAGATTCATGTGATCGATCTTGGTATTAAGACCGGTTTGCATTGGACAATATTGATGCAGGCACTTGCTTCCAGAGAAGAGTGCCCTCTTGAGCTTTTAAAAATAACTGCTGTTGGAACAAGTTCAATGCATTTGATCGAAGAAACTGGCAAGCGATTGATGAGTTTTGCTGCCTCCTTGAACATACCCTTTGCTTTTAGGGTGATCATGGTGACAGACATGTTAAACCTCAGTGAATTTTTCTTCGATAAAGCTTTTGATGACAAGGTTGCTGTCTATGCATCATTTTCATTGAGGAGCCTCCTTCCTTTCCCTGACAGGCTTGATGCAACTATGAAAATTATCAGAAAATTGAATCCAAGAATCATGGTTGTTGCAGAAGCTGAGGCTAATCATAATTCAAAGTCATTCGTGAGCCGTTTCACTGAGGCACTTTTCTTCTTTAGTGCATACTTTGATTGCCTTGAAGCTTTCATGGCTAGGGAAGACCCTCACAGAATGATTGCAGAATCAATGTTCTTCGGTGCAGGTATAAGGAACATTGTGGCAACTGAAGGAGAAGAAAGAAACATCAGAAGTGTAAACATTGATGTATGGAGGAAATTTTTCGCTCGATTTGGAATGATTGAGATGGAATTCAGCTCTTCATCCTTACACCAAGTAGATATATTGGTTCAGAAATTTGGTTGCAAGAGTTCTCTAACTGTTGATTGGAATGGGAGTTGCTTACTCCTAGGTTGGAAGGGCACTCCACTTAGCTCACTCTCAGTATGGGAATTCTTGTGTTGA 1689 0.4127 MAGGESPFYGLSPIDNDLETAAASVCESHHACLSDTHGWEKSFGIASLFAKIEDLQFDRKIGPVKALSEQFAEFSEFPKLFNNAGNDDPQRCTEQQSIPLASNELLENYARKFRGSLEGTRAKPIDQELTCIGGEDKQLSTEQIMRIAGARFVQSFSPTSDDTPNGKYPFGISFFESELPTEVLKDVELAETLLLSAQEVGNEQYGAATKLLDQCDSLSSNTEHPVQRVVFYFSEALRERIDRKTGKTTSKGLAKKQTRNLDEAMMNSPTSLAFHEKLPFSQILQFAGIQAIIESMANAKKIHVIDLGIKTGLHWTILMQALASREECPLELLKITAVGTSSMHLIEETGKRLMSFAASLNIPFAFRVIMVTDMLNLSEFFFDKAFDDKVAVYASFSLRSLLPFPDRLDATMKIIRKLNPRIMVVAEAEANHNSKSFVSRFTEALFFFSAYFDCLEAFMAREDPHRMIAESMFFGAGIRNIVATEGEERNIRSVNIDVWRKFFARFGMIEMEFSSSSLHQVDILVQKFGCKSSLTVDWNGSCLLLGWKGTPLSSLSVWEFLC* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01513 562 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 143 552 IPR005202 -
Pte3g01513 562 ProSiteProfiles GRAS family profile. 180 559 IPR005202 -
Pte3g01513 562 Pfam GRAS domain family 191 559 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01513 Pte-Chr3 13450315 13452003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01513 187 560 GRAS Transcription Factor Family AT1G66350 32.540 1.98e-56 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte3g01513 GRAS 3.7e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01513 - - qsa:O6P43_021850 561.992