Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01501 ATGAATCTGATTAACGGGAAGGGATCTATGTCAACGGCTACTTCTGCTCCTGCTCGGAAATCTACTGACATGGTGTCTGACAAGTTCCCTGCTGGTTTACGTGTGCTGGTAGTGGATGATGATCCCACTTGCTTAATGATCTTAGAGAAAATGCTAAGGACTTGTCTCTATGACGTTACCAAATGCAATCGAGCGGAGATGGCTTTGCAATTACTTAGACAGAACAAGAATGGATTCGACATAGTTTTAAGTGATGTGCATATGCCCGACATGGATGGTTTCCAACTCTTAGTTGACATCGGACTGGAGATGGACTTACCAGTTATCATGATGTCTGCAGATGATAGTAAACATGTTGTCATGAAGGGCGTGACACATGGTGCTTGTGATTACCTGATAAAACCGGTCCGCATTGAGGCTTTGAAGAATATATGGCAGCATGTTATTCGGAAGAAGAAGAATGATGGGAAAGACATGGAGCAATCAGGTAGTGCTGATGAAGGAGATCAGCCGCTGAAACCATCTGAAGATGCAGATTATTCGTCCTCTGCAAATGAAGGAAATTGGAGAAATGCTAAGAAGAGGAAGGATGAGGATGAAGAAGCAGAAGACAGGGATGATAATTCCTCATTAAAAAAGCCACGGGTGGTTTGGTCTGTTGAGCTTCATCAACAATTTGTTGGAGCTGTCGAACAGCTTGGAATTGACAAGGCTGTTCCAAAAAAGATTCTGGAGTTGATGAATGTTCCCGGACTCACCAGAGAAAATGTCGCTAGCCATCTCCAGAAATATCGCTTGTACCTAAGAAGGCTACATGGCAATCCCCACCATGGCACCTTAAGCAACTCGTTCATCGCCCAACAAGAAGCAACATTTGCGCCAATGTCTTCACTAAATGGTCTCGATCTTCATGCTCTCGCTGCGACTGGTCAGCTTCCTGCTCAAAGTCTTTCTACACTCCAAACTTCAGGACTTCGATCAACCGCAAAACCTAGCATACCTATGGCTCTTGAGCAAAGGAACTCGTTCAGCTTTGACAATCCCAAATTAAGTTTTGCAGATGTCCAACAGCAACCCATTACCAGTGGAAAGCCTATGAACTTACTCCATGGAATCCCCACCAATATGGAACCAAAGCAGCTTGCCAATCTTCACCAATCGGCACAATCCCTTGGCAATATGAACACACGAGTCAGTGCTCCTGGAGGTCAGAGCAACACCTTATTGATGCAGATGGCTCAACAACAACCGAGGAGGAAGATGGTAAATGAAAGCACAGTTAACCAAATCCCAAGGCTTCCGTCTTCTGTTGGGCAGGCAATTATGCCTAATGGGTTGTCCAGTGGTATGTTAGGCAGAAATGGTATCCCTAATAACAGAACAGCTCCATCATCATATACTCCAGTTCCACAGAACTCCTCAACCTTGAATTATCCCACGAATCACCCCACCGAAATGCAGGTGCATAATTTGCCTCTTGGGAACATGCAAGGGATGTCAAATTCACAGAAGAAAGTATCATTCCCCCGGGAGTTTAACCCAAGCATGAAAGGACCTCAGGGTTACATCCCTAGTTATAATATTTTTAATGAATTGAACCTGCAAAAACCAAATGATTGGGAGTTACAGAATGCAGGGTTAAACTTTCATGCCTCACAACGTGGAAACCTTTCTTCACAAGACAACCTAGACGTCTCCCCGTCAGTGCTAGTTCAGCATGGCTTTTCTTCCCGCCTGCAGGATGGGCAGAATATTGGTATTGGAAAGAGTATGCTCTCTCACACAGAAGGAATTCAACAAACCCAGCATATTAGTCAATCTTTCATCCCACTCGTGGAGAATCCTGCAAGAGCTAAAGCTGAGAGAGTCGCTGATGCAACTCATGCAAGCGTTCAGAATTCTTTCTTTCCAGAACAATTTGGGCAGGATGATCTTATGAGTGCACTACTGAAACAGCAGGAAGGCATTGGATCAGCTGATAATGACTTTGACTTTGACGGATACTCCTTGGACAATATTCCCGTCTAG 2028 0.4453 MNLINGKGSMSTATSAPARKSTDMVSDKFPAGLRVLVVDDDPTCLMILEKMLRTCLYDVTKCNRAEMALQLLRQNKNGFDIVLSDVHMPDMDGFQLLVDIGLEMDLPVIMMSADDSKHVVMKGVTHGACDYLIKPVRIEALKNIWQHVIRKKKNDGKDMEQSGSADEGDQPLKPSEDADYSSSANEGNWRNAKKRKDEDEEAEDRDDNSSLKKPRVVWSVELHQQFVGAVEQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLHGNPHHGTLSNSFIAQQEATFAPMSSLNGLDLHALAATGQLPAQSLSTLQTSGLRSTAKPSIPMALEQRNSFSFDNPKLSFADVQQQPITSGKPMNLLHGIPTNMEPKQLANLHQSAQSLGNMNTRVSAPGGQSNTLLMQMAQQQPRRKMVNESTVNQIPRLPSSVGQAIMPNGLSSGMLGRNGIPNNRTAPSSYTPVPQNSSTLNYPTNHPTEMQVHNLPLGNMQGMSNSQKKVSFPREFNPSMKGPQGYIPSYNIFNELNLQKPNDWELQNAGLNFHASQRGNLSSQDNLDVSPSVLVQHGFSSRLQDGQNIGIGKSMLSHTEGIQQTQHISQSFIPLVENPARAKAERVADATHASVQNSFFPEQFGQDDLMSALLKQQEGIGSADNDFDFDGYSLDNIPV* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01501 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 373 IPR045279 GO:0009736
Pte3g01501 675 SUPERFAMILY Homeodomain-like 211 270 IPR009057 -
Pte3g01501 675 CDD REC_typeB_ARR-like 35 149 - -
Pte3g01501 675 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Pte3g01501 675 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Pte3g01501 675 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Pte3g01501 675 MobiDBLite consensus disorder prediction 1 21 - -
Pte3g01501 675 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Pte3g01501 675 MobiDBLite consensus disorder prediction 189 211 - -
Pte3g01501 675 FunFam Two-component response regulator 33 170 - -
Pte3g01501 675 Gene3D - 212 272 - -
Pte3g01501 675 PIRSF RR_ARR_type-B 11 667 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pte3g01501 675 SMART REC_2 33 145 IPR001789 GO:0000160
Pte3g01501 675 SUPERFAMILY CheY-like 32 153 IPR011006 -
Pte3g01501 675 MobiDBLite consensus disorder prediction 152 174 - -
Pte3g01501 675 MobiDBLite consensus disorder prediction 152 211 - -
Pte3g01501 675 MobiDBLite consensus disorder prediction 1 23 - -
Pte3g01501 675 Gene3D - 33 211 - -
Pte3g01501 675 FunFam Two-component response regulator 209 272 - -
Pte3g01501 675 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Pte3g01501 675 MobiDBLite consensus disorder prediction 454 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01501 Pte-Chr3 13341229 13345706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01501 67 676 Response Regulator Gene Family AT3G16857 47.248 8.98e-160 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pte3g01501 Response_reg 9.6e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01501 - K14491 qsa:O6P43_021811 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01501 3 13341229 13345706 Pte3g01501 3 13341229 13345706 RCT