Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01488 ATGGATGACGATTTTGAATTTCCAGCCTCAAACAATGTTGATATGGAAGACATGGACATTCCGCAAGACGATCCAGCTGCACCCGCTACTGTCAAGGTTGGTGAGGAGAAGGCGATAGGGAAGAATGGGCTCAAGAAGAAGTTAGTTAAGGAAGGTGAAGGTTGGGAGACCCCCGGTGGAGGAGATGAAGTTGAAGTTCATTATACTGGTACTCTGCTTGATGGAACTCAATTTGATTCTAGTCGCGAGAGAGGAACCCCGTTCAAGTTCAAGCTCGGTCAAGGGCACGTGATTAAGGGATGGGATGAAGGAATCAAGACAATGAAAAAGGGCGAGCATGCCATTTTTACAATACCTCCAGAGTTGGCATATGGCGACGCTGGATCTCCTCCAACCATTCCTCCCAATGCAACTCTCCAATTTGATGTGGAATTGCTTTCTTGGGTCAGTGTTAAGGATATATGCAAAGACGGGGGAGTATTGAAGAAAGTACTTGTGGAAGGGGAGAAATGGGAAAACCCTAAGGACCTTGATGAGGTGCTTGTTAAGTATGAGATTCGTCTTGATGATGGAACACTCGTATCAAAATCTGATGGGGTTGAGTTCACTGTGGGAGATGGCTACCTGTGTCCAGCTTTCGCTAAAGCTGTCAAGACAATGAAGAAGGGGGAGAAAGTTTTGTTAACAGTGCAGCCCAAATATGGATTTGGGGAGACTGGCAGATCAGCTGCTGATGACGAAGGTGCTATTCCTCCAAACGCTACCCTCCAAATCAACCTTGAGTTGGTTTCCTGGAAGAATGTGACTGACATAACCAAGGATAAGAAAGTTCTCAAGAAAACTGTAAAGGAGGGTGAGGGATATGAACGGCCAAATGATGGGGCAGTGGTGCAAGTTAGATTTGTTGGCAAGCTGGCAGATGGTACTGTATTTACTAAGAAAGGATATGATGAGCAGCCATTTGAGTTCAAAATTGATGAAGAGCAAGTAATTGATGGGCTTGATAAAGCTGTAAAAAACATGAAGAAGGGGGAAGTTGCACTAGTGATCATACAACCAGAGTATGCCTTTGGCTTCTCTGAATCATCACAAGAAATGGCGGTTGTTCCTCCAAGATCAACTGTGTACTATGATGTTGAGCTTGTTTCTTTTGAAAAGGAGAAAGAATCTTGGCAATTGAGCAAGGGGGAAAAACTTGATGCAGCAGCCAAAAAGAAGGAAGAAGGGAATGCATTGTTCAAGGCTGGAAAATATGAGAGGGCTTCAAAGAGATATGAAAAGGCTGTTAAATATATTGAGTATGAAACTGACTTCAGTGACGAAGAGAAACAGCAGAGTAAGGCATTGAAGACTACCATTAACCTAAACAACGCAGCTTGCATGCTGAAACTTAAAGACTACAAACAGGCAGAAAAACTATGCACTAAGGTATTAGAACTAGACAGCAGAAATGTGAAAGCTCTATACAGAAGGGCACAGGCATATATACAACTGGTGGATTTGGATTTGGCAGAAGGTGATATCAAAAGGGCCCTTGAGATTGATCCAGACAACAGGGATGTGAAGCTGGAATACAAAATTTTGAAGGAAAAAGTGAGGGAGTACAACAAAAAGGATGCTCAGTTCTATGGTAGCATATTCGCAAAGATGAACAAACTAGACCATTCTAGAAGTGCTCAGGGTGCGGCGAAGCAGGAAGCAGTTCCAATGACCATAGATAGTAAGGCGTGA 1731 0.4344 MDDDFEFPASNNVDMEDMDIPQDDPAAPATVKVGEEKAIGKNGLKKKLVKEGEGWETPGGGDEVEVHYTGTLLDGTQFDSSRERGTPFKFKLGQGHVIKGWDEGIKTMKKGEHAIFTIPPELAYGDAGSPPTIPPNATLQFDVELLSWVSVKDICKDGGVLKKVLVEGEKWENPKDLDEVLVKYEIRLDDGTLVSKSDGVEFTVGDGYLCPAFAKAVKTMKKGEKVLLTVQPKYGFGETGRSAADDEGAIPPNATLQINLELVSWKNVTDITKDKKVLKKTVKEGEGYERPNDGAVVQVRFVGKLADGTVFTKKGYDEQPFEFKIDEEQVIDGLDKAVKNMKKGEVALVIIQPEYAFGFSESSQEMAVVPPRSTVYYDVELVSFEKEKESWQLSKGEKLDAAAKKKEEGNALFKAGKYERASKRYEKAVKYIEYETDFSDEEKQQSKALKTTINLNNAACMLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEGDIKRALEIDPDNRDVKLEYKILKEKVREYNKKDAQFYGSIFAKMNKLDHSRSAQGAAKQEAVPMTIDSKA* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01488 576 SUPERFAMILY FKBP-like 154 271 - -
Pte3g01488 576 Gene3D - 36 151 IPR046357 GO:0003755
Pte3g01488 576 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 157 269 - -
Pte3g01488 576 SUPERFAMILY TPR-like 397 550 IPR011990 GO:0005515
Pte3g01488 576 MobiDBLite consensus disorder prediction 1 27 - -
Pte3g01488 576 SUPERFAMILY FKBP-like 36 153 - -
Pte3g01488 576 Gene3D Tetratricopeptide repeat domain 392 545 IPR011990 GO:0005515
Pte3g01488 576 Coils Coil 518 538 - -
Pte3g01488 576 SMART tpr_5 402 435 IPR019734 GO:0005515
Pte3g01488 576 SMART tpr_5 451 484 IPR019734 GO:0005515
Pte3g01488 576 SMART tpr_5 485 518 IPR019734 GO:0005515
Pte3g01488 576 Pfam Tetratricopeptide repeat 463 521 - -
Pte3g01488 576 FunFam Peptidylprolyl isomerase 267 387 - -
Pte3g01488 576 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 61 149 IPR001179 GO:0003755
Pte3g01488 576 FunFam Peptidylprolyl isomerase 153 266 - -
Pte3g01488 576 ProSiteProfiles TPR repeat profile. 485 518 IPR019734 GO:0005515
Pte3g01488 576 FunFam Peptidylprolyl isomerase 34 152 - -
Pte3g01488 576 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 294 385 IPR001179 GO:0003755
Pte3g01488 576 Gene3D - 267 391 IPR046357 GO:0003755
Pte3g01488 576 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 177 266 IPR001179 GO:0003755
Pte3g01488 576 SUPERFAMILY FKBP-like 271 402 - -
Pte3g01488 576 Gene3D - 152 266 IPR046357 GO:0003755
Pte3g01488 576 FunFam Peptidylprolyl isomerase 390 545 - -
Pte3g01488 576 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 172 263 IPR001179 GO:0003755
Pte3g01488 576 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 56 146 IPR001179 GO:0003755
Pte3g01488 576 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 288 382 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01488 Pte-Chr3 13191753 13194699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01488 20 577 Calmodulin-binding Proteins AT5G48570 71.936 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01488 K09571 - qsa:O6P43_023604 932.554