Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01487 ATGGTTGTACTCTGTAAGTTTCAAAAATTCTTATGTGCAACAGGGGTTCGAAGCTCAGAATTCTCAAATTCGCTAGCAATATTGAACAGATGTTATCATGTCAATTCAGAAACCAGCAGCATTAAAGTGCTTCGGAACTTATCAGGTCCACCAAGTTTGCCCAAGAGTGTTGCTCTTTTCTGGGACCTGAACAACAAACCACCGAAATCGTGCCCATTATATCAAGCTGCTGTGAAGCTAAAAACAGCTGGTTCTTCCTTTGGGATCATCTGCCACATGGTAGCATACGCAAACAGGCATGCTTTTTCATGTGTGGCACAATATGTTAAGGATCAAAGGAAAGAGAAGAAGGTATGTAACCAGTTGGAGAGTAGAGGTATGAATAAGCCAAGTGAACCTTATCTTTGCCGAGTTTGTGGGAGAAGATTTTATACGAATGAGAAACTGGTTAATCATTTTCAACAAATTCATGAGCGTGAGCACAAGAAGAGGTTGAATCAAATTGAGTCAGCAAGGGGTAAAATGAGGGTAAAGTTGGTGGCTAAATACTCGATGAAAATGGAGAAGTATAAAAATGCAGTAAGGGAAGTTCTAACTCCAAAAATAGGGGTTTGTCTGGCAAGTGAGTTAAAACGAGCTGGTTTTCTTGTTCAGTCTGTGCCAGATAGGCCACAAGCAGCAGATATTGAAGTGAAAGATCATATGATTGCTCTGATGGACAAGAAACATATTGGTTGCATGGTTATTGTGTCTAATGATTCTGATTTTGTTGACGTTTTAAAGGAGGCAAAGTTAAGAGGCCTCAAGACTGTTGTTGTTGGTGATATCAGTGATGGAGCGTTGAAGAGGATCGCTGATGTTGGATTTACTTGGACTGAAATTTTGATGGGGAAGGCAAAAAAGGAGTCAACTTCAGTCCTGGAGAGATGGAAGGATCGTGATATTTTAAAAAGGCTAGAGTGGCGATATGATCCAGATGAAGAGAGAAAGAAATGCCATTTGGAAGATGCTGATTCTCCAGTGACAGACGATGAGGATTTCGTTGAGGGAATGGATGGTGACAACAAACAGTTTGATGACTCACATGCTTGGTGGGAATTGGATTAG 1107 0.4074 MVVLCKFQKFLCATGVRSSEFSNSLAILNRCYHVNSETSSIKVLRNLSGPPSLPKSVALFWDLNNKPPKSCPLYQAAVKLKTAGSSFGIICHMVAYANRHAFSCVAQYVKDQRKEKKVCNQLESRGMNKPSEPYLCRVCGRRFYTNEKLVNHFQQIHEREHKKRLNQIESARGKMRVKLVAKYSMKMEKYKNAVREVLTPKIGVCLASELKRAGFLVQSVPDRPQAADIEVKDHMIALMDKKHIGCMVIVSNDSDFVDVLKEAKLRGLKTVVVGDISDGALKRIADVGFTWTEILMGKAKKESTSVLERWKDRDILKRLEWRYDPDEERKKCHLEDADSPVTDDEDFVEGMDGDNKQFDDSHAWWELD* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01487 368 ProSitePatterns Zinc finger C2H2 type domain signature. 136 157 IPR013087 -
Pte3g01487 368 SUPERFAMILY beta-beta-alpha zinc fingers 131 160 IPR036236 -
Pte3g01487 368 MobiDBLite consensus disorder prediction 351 368 - -
Pte3g01487 368 Gene3D - 53 294 - -
Pte3g01487 368 Pfam NYN domain 208 291 IPR021139 GO:0004540
Pte3g01487 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 162 IPR013087 -
Pte3g01487 368 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 50 367 - -
Pte3g01487 368 MobiDBLite consensus disorder prediction 329 368 - -
Pte3g01487 368 CDD PIN_LabA-like 144 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01487 Pte-Chr3 13186558 13190965 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01487 30 368 C2H2 Transcription Factor Family AT4G12240 52.450 6.01e-127 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte3g01487 NYN 5.2e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01487 - - qlo:115972370 454.136