Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01482 ATGGAACAGGACAAGTTCTTTGTGGATGAAAGAGGTAACACTACCCCACCACCCACTTGGAACATTTGTACGTTTGCCATGGAAAAAATCCAACCCAATGAACTGAATTGTGGTAGTGGCAGCAATTTTTTCCTCAATCCCGATTGGGGAAGTTCAGTGGATCAAAGTGATCCCTTTGAGTCTGCATTGAGTTCCATCGTATCTTCTCCGGCAACATCTAACGCCGGAGTCATCAGTGCCGGTGGCGGTGACAGTGTTATGATAAGAGAACTTATAGGAAAGTTAGGAAACATTTGCAACTCTGGGGATCTTTCTCCTCAGTCTTACATTGCAAGCAACGGCAACCAGAGCACTAACGCATCTTGCTACAGTACACCATTGAATTCCCCTCCAAAACTCAACCTTTCAACTATGGATTCACAGATCAGAGGCAGTATCCCAATTCCAAAGAATCATTTACCTTCTCATCCAAACTTAGTAACTTTTTCTACAGACCCTGGATTTGTGGAGAGGGCAGCAAGATTCTCCTGTTTTGGAACGGGGAATTTGAGTGGCATACATGGGAATTTGGCACGTCCTGAGTTGCCTTACAGATCGACTCCAGTAATGGATTCAGTTCAGCTAAGAGTTTCACCTAGCAATCTATCAGTTAAGGCTGCTGGATCTCAATTAGGCTCTCAGGACAACAATAGGAGATTGACACATGAAGCAAATATACTATCCAGGTCCTCTACCCCTGAAAATGGTGAATTCCGAGAATCTCCGGAAGGATCTCTTCAATCTGAACGGACCCCAGGTGGTGAATTGAGCACCAAAGGTGAAAATGATTCAGGTTCTAGGAAAAGGAAATCAATTCCAAAGGGAAAATCAAGAGAGACCACTCATTCTCCCTCTGCTAAAGATAACAAGGTTGGAGTTGAGACTGAAGAATTCAATTCCAAGAAAAGGAAATCAGATGAAGCTACTGGGAATGATGCTGCAAAGGCAAAAGTAGAAGCAGAGTCAAATGCAAGGGAAGGAGATGAGAAACAGGATAAGGATAGTCCAAAACCTCCTGAGCCTCCAAAAGACTATATTCATGTTAGAGCCAGAAGGGGTCAAGCTACAGATAGCCATAGTCTCGCTGAAAGGGTCCGAAGAGAGAAAATCAGCGAAAGAATGAAGTTTCTTCAGGACCTTGTCCCTGGTTGCAACAAGGTAACAGGAAAGGCAGTTATGCTAGATGAAATAATAAACTATGTGCAATCGTTGCAGCGTCAGGTTGAGTTTCTTTCAATGAAGTTGGCAACTGTTAATCCAAGGATGGATGTCAATATGGAGGCCCTTCTTTCAAAAGATATCTTTCAATCTCGTGAAAATTTACAGCATGCTCTGTACTCTCTGGATTCATCAATGCTAGCATTTCCATATGGATGCCAACCCCATACATTGCCACCCCAGCATGGCAGCAACTCCGCTGTAGTGGGCAGCCAATTCTCTATGAATAATGTGAATTCAGCATTACATAAGAATCCAGAAATACAGATGGCACCAGTAGGGGGATTAAGTGAAAATACCACTCCAGTTCCTTCTATTTGGGAAGATGATCTCCAAAGTTTGGTTCAGATGGGGTTTGGACAAAATCAATAG 1629 0.4322 MEQDKFFVDERGNTTPPPTWNICTFAMEKIQPNELNCGSGSNFFLNPDWGSSVDQSDPFESALSSIVSSPATSNAGVISAGGGDSVMIRELIGKLGNICNSGDLSPQSYIASNGNQSTNASCYSTPLNSPPKLNLSTMDSQIRGSIPIPKNHLPSHPNLVTFSTDPGFVERAARFSCFGTGNLSGIHGNLARPELPYRSTPVMDSVQLRVSPSNLSVKAAGSQLGSQDNNRRLTHEANILSRSSTPENGEFRESPEGSLQSERTPGGELSTKGENDSGSRKRKSIPKGKSRETTHSPSAKDNKVGVETEEFNSKKRKSDEATGNDAAKAKVEAESNAREGDEKQDKDSPKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDVNMEALLSKDIFQSRENLQHALYSLDSSMLAFPYGCQPHTLPPQHGSNSAVVGSQFSMNNVNSALHKNPEIQMAPVGGLSENTTPVPSIWEDDLQSLVQMGFGQNQ* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01482 542 Pfam Helix-loop-helix DNA-binding domain 371 418 IPR011598 GO:0046983
Pte3g01482 542 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 367 417 IPR011598 GO:0046983
Pte3g01482 542 MobiDBLite consensus disorder prediction 274 358 - -
Pte3g01482 542 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 365 436 IPR036638 GO:0046983
Pte3g01482 542 FunFam Basic helix-loop-helix transcription factor 364 437 - -
Pte3g01482 542 CDD bHLH_AtBPE_like 357 442 - -
Pte3g01482 542 Gene3D - 364 439 IPR036638 GO:0046983
Pte3g01482 542 SMART finulus 373 423 IPR011598 GO:0046983
Pte3g01482 542 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 259 476 IPR024097 GO:0006355
Pte3g01482 542 MobiDBLite consensus disorder prediction 237 273 - -
Pte3g01482 542 MobiDBLite consensus disorder prediction 237 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01482 Pte-Chr3 13131183 13134606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01482 49 464 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 45.823 6.58e-83 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte3g01482 HLH 7.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01482 - - qsa:O6P43_002570 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01482 3 13131183 13134606 Pte3g01482 3 13131183 13134606 RCT
Pte3g01482 3 13131183 13134606 Pte3g01358 3 11860449 11861836 RCT