Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01460 ATGGAGATAAGCTGCCTTCCGAACGACAATGGTAGAAGTACCCCTGTTTGCAGTGACTCAACTGGTGTTTCATCCAACGACCAACGTTACAGTGGCCACGCACAACCTGCTTATGCGAGTGGATGGATGTATGTAAATGAACATGGCCAGATGTGCGGGCCTTATATACAGGAGCAGCTATTTGAGGGGCTAGTAACGAGTTTCTTGCCTGAGGAGCTTCCTGTGTATCCTGTTATTAACGGAGAATTATGTAGCTCTGTACCACTGAAGTTCTTCAACATGTTTCCTGACCATGTTACCACTGGGTTCGCTTATTTGAATGCTAATATCTCGAGCACCAATTGTAGGGCTGTAAATTCCTTAGCCCCTCACTCTGCTGGTGTAGCTGGACAGAGAAAAGAAGATTTTATCGATGTTACTGTCAGGGAAAGTTCTCCAAATATAAATTCCAGGCATCTCGGTTTGAATTCTGATTTGCCTAATGATGTCAGAATTTTCCAGCTGGTGGCAGATGAAGAGTGCTGTTGGTTATATGAGGATGATAAGGGAGCTAAGATGGGGCCATACTCTTTTTTACAATTGCTTTCTTGGTATAACCATGGATATCTTCAGGATTCATTGATGATATATCATTCTGAAAACAAGCTCAGTCCTCTTGTCCTTCACTCTGCTTTGAGTGCATGGAAAGCTGGTTGTTTCCAAACCCGGTCTACACCAAATTCTAGAAGCAAGGAGGCCGACACACTTTGTAACTTCATAAATGAGATATCAGAGGACATTTCTTTGCAACTGCACTCAGGAATCATTAAATCTGCTCGCAGAGTAGTGCTTGATGAGATCATGAGCAGCATTATTTCTGAGTTTGTAACTGTCAGAAAGGATCCAAGGCATAAACTCGAATCAGTTGTTAAATCTTCATTGGATGTCTCTGAAGATAGCCAGATGCTTCAAACTTCCGAAGAAATGGGAAAACCTTTATTTTCTGGGAATGGCAGTTCTTCTTGTGCTGTCAAGAAAAAAGCAGTTAATTGTGAAATCTCGTTGGGGTCAAGCTTTAAATCAGTGGGAAGCATTGAAAACTTTTGGTGGTCATACACCATTGTGCGCAGAATGATTTTTGAGTATTGCTTACAAGTTATGTGGAATGCAGTTTTTTATGACACTGTATGTAACTACGTTTCTGCCTGGAGAAAGAGAAAACTTTGGTCTGATGCTGCACAACTAGTTACCAAGCATGGGAACCATGTTATGGTCAAACGTACTGAAACTCTAAATTCTTCTGCAAAGGATGCTGGTAACCATCTTTCTTTTGAAGCTCAAGGAATTGAGAATAAATGTCATAACAGAAGAACATCATGCTTGGATCAGATAGAGGAGGATCTAAATGCAATATTTGAGGGAGTTGACGGTGAACTTCACTCGTCTGCAATGCTGTCATTGACTGAATTTGTTTTGAATTTTGTTGAGGAAGAAGTGAAAAATTTGATCTGTGGTCCTCGATATGCAGATAAATTGCTGGATGATGTCAGCACTTCAATTTGTCAGCATTATAATGAATCTAGTTTTCCAGAAATAGCTACTCTTGAAACATCAAAAAAGAACATTTTCTCCAATGAGAAATCTTTATTGCCCATAGCAGCTAAAAAACAATTTTGTCTGTCTTCATCTGCTAACATTTCATCCTATTTCAGCAGTGCATTCAAAACAATTAAACATATGAATGACAATGTTAATTTTGATGATCCGCCTCCTCCTGGTTGTGAAGAGGACTCTAGTCTGGTTGTTCCTTCGTATGGTTGTAAATATCGATCTTCAAGGTCTGTTGAAAGAATCCCAAGGATGGCAGAATATGTTACTGTAGCACTGTTTCGACAAAAGTTGCATGATAAAGTTCTTGAAGAGTGGAAGTCTATGTTTTCTAATTGTGCTCTACAGGAGTTTGTATCATCTTTTTCAGAAAAGAAGCATAGCAAAACTGATGGCAGTAAGGAGCAATTTTCAAGTGATGTGACCAAAGTAATGGAAAGACCTAAAGATGGGGAGAAGATTCGCTCATCTGGAGCTTCTCTTTTGATTGGGAAGTTTACTTATCAGCGCAAGAGAAAGCTGTCCAGGCAAACTTGGGAGTCCTCTCAATGTATTGCTCCAGTTGGTTCTGAGCGAAAGGATCAGGACCTTGAAGGTTTGGTGAGTCATGTCTCAGAGAATGTGGGCAAAAATGCTGAAGTTAAAATGGTTTATGTTAAACCTAAAAAGGGGGAGAATGTTGGGAAATTGCGACGAGAGATTTCTCAGAAATCTAGGGAGCCAATTGTCAAGTCTTCAGTGAAAAATGAGACTAGTCATAAAAAGTTGAAGATTTCAAAAGAGGTTTTAGATGATACCTGTAAAACTAGTGCTAAAACTTGCCGGGTTGACGCTGTTATGGGAGATTCTAGCCGTCAGTGCTCTAAAAAGACTGTAAAATCAACCAGCAAGGCATCAAAAGAAAAAAGGAAGCATCCAATGAACAGCGCAACTTCCTCGCGGCCTTGTAAATTCTATAAAGCAGATAAAGATGGAGGGAAATTGCAAGCTTCTAAACAGGTTACAAAACCGACAAAGAAATCTAGTAAATCTGGTCCTCTGAGTTTATGCCCTAGATCTGAGGGGTGTGCTAGGTCATCCATTTTTGGGTGGGAATGGCGTAGGTGGTGTTCAGGTGCCAGTGCTGCTGATAGGGCTCGTTTTAGGGGTAACCAGTTTATTCAGTTGAGGTACCTGGATACTGATATCAATACATCTCAGTTCTTAAATGGCAAGGGAATTTCTGCAAGAACAAACAGAGTCAAACTGCGTAACCTTCTAGCTGCTGCAGAGGGTGCTGAGCTTCTCAAAGCCACTCAAGTAAAGGCTAGAAAAAAGAGATTATGTTTTCAACGAAGCAAGATTCATGACTGGGGTATTGTTGCCTTGGAGCCTATAGAGGCGGAGGACTTTGTCGTTGAATATGTTGGAGAACTGATTCGTCCCCGGATATCTGATATTCGTGAACGACAGTATGAGAAGATGGGGATTGGAAGCAGCTATCTTTTTAGGCTTGATGACGGTTATGTGGTTGATGCTACAAAACGTGGAGGAATTGCCAGATTTATAAATCATTCTTGTGAGCCAAACTGCTACACGAAGGTTATATCTGTTGAGGGTGAAAAAAAGATTTTTATCTATGCAAAGCGGCATATAGCTGCCGGTGAAGAAATTACTTATAATTACAAGTTCCCCTTGGAGGAAAAAAAGATCCCCTGCAACTGTGGTGCTAAAAAGTATGATTGTGATCACCAAGTATAA 3327 0.4055 MEISCLPNDNGRSTPVCSDSTGVSSNDQRYSGHAQPAYASGWMYVNEHGQMCGPYIQEQLFEGLVTSFLPEELPVYPVINGELCSSVPLKFFNMFPDHVTTGFAYLNANISSTNCRAVNSLAPHSAGVAGQRKEDFIDVTVRESSPNINSRHLGLNSDLPNDVRIFQLVADEECCWLYEDDKGAKMGPYSFLQLLSWYNHGYLQDSLMIYHSENKLSPLVLHSALSAWKAGCFQTRSTPNSRSKEADTLCNFINEISEDISLQLHSGIIKSARRVVLDEIMSSIISEFVTVRKDPRHKLESVVKSSLDVSEDSQMLQTSEEMGKPLFSGNGSSSCAVKKKAVNCEISLGSSFKSVGSIENFWWSYTIVRRMIFEYCLQVMWNAVFYDTVCNYVSAWRKRKLWSDAAQLVTKHGNHVMVKRTETLNSSAKDAGNHLSFEAQGIENKCHNRRTSCLDQIEEDLNAIFEGVDGELHSSAMLSLTEFVLNFVEEEVKNLICGPRYADKLLDDVSTSICQHYNESSFPEIATLETSKKNIFSNEKSLLPIAAKKQFCLSSSANISSYFSSAFKTIKHMNDNVNFDDPPPPGCEEDSSLVVPSYGCKYRSSRSVERIPRMAEYVTVALFRQKLHDKVLEEWKSMFSNCALQEFVSSFSEKKHSKTDGSKEQFSSDVTKVMERPKDGEKIRSSGASLLIGKFTYQRKRKLSRQTWESSQCIAPVGSERKDQDLEGLVSHVSENVGKNAEVKMVYVKPKKGENVGKLRREISQKSREPIVKSSVKNETSHKKLKISKEVLDDTCKTSAKTCRVDAVMGDSSRQCSKKTVKSTSKASKEKRKHPMNSATSSRPCKFYKADKDGGKLQASKQVTKPTKKSSKSGPLSLCPRSEGCARSSIFGWEWRRWCSGASAADRARFRGNQFIQLRYLDTDINTSQFLNGKGISARTNRVKLRNLLAAAEGAELLKATQVKARKKRLCFQRSKIHDWGIVALEPIEAEDFVVEYVGELIRPRISDIRERQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVISVEGEKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCNCGAKKYDCDHQV* 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01460 1108 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 767 1101 IPR044570 GO:0042800|GO:0051568
Pte3g01460 1108 ProSiteProfiles GYF domain profile. 173 226 IPR003169 GO:0005515
Pte3g01460 1108 Pfam GYF domain 176 212 IPR003169 GO:0005515
Pte3g01460 1108 Gene3D SET domain 922 1092 IPR046341 -
Pte3g01460 1108 MobiDBLite consensus disorder prediction 814 877 - -
Pte3g01460 1108 SUPERFAMILY GYF domain 168 217 IPR035445 -
Pte3g01460 1108 Gene3D - 161 255 IPR035445 -
Pte3g01460 1108 CDD SET_SETD1 956 1101 IPR037841 GO:0042800|GO:0048188
Pte3g01460 1108 SMART set_7 968 1091 IPR001214 GO:0005515
Pte3g01460 1108 Pfam SET domain 980 1084 IPR001214 GO:0005515
Pte3g01460 1108 MobiDBLite consensus disorder prediction 860 877 - -
Pte3g01460 1108 ProSiteProfiles SET domain profile. 968 1085 IPR001214 GO:0005515
Pte3g01460 1108 MobiDBLite consensus disorder prediction 1 30 - -
Pte3g01460 1108 SUPERFAMILY SET domain 964 1100 IPR046341 -
Pte3g01460 1108 MobiDBLite consensus disorder prediction 7 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01460 Pte-Chr3 12855118 12866953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01460 974 1099 C2H2 Transcription Factor Family AT2G23740 37.162 5.08e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pte3g01460 SET 5.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01460 - - qsa:O6P43_018808 949.888