Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01454 ATGGATGAGGGAAAGCAAAAGTCCCGTAAGGAAGAATCTGACAGGAAAGGGGAAGTGAGGAGGAGTCATCGCGATCATCGTGACAGGGAAAAAAGTAAGGACAGTAAGCCCAAAGACAGGGATAGAGGTAGAGATAGGCATAGGGATAGAGATAGGAAGGAGGGAAGAAGCAGGCATCACGACAGAGAAAGCAGCAGCAGCAGCAGCAGCAGCAGTGGGAGTGAATCTGATAGGGAGAGAGAGAGGGATAGGGGCAAGGAGAAGCGTAGGGACAAGAAACGGGATAAAGATCATGATGGTAGGAGAGAAAGAGCTAGAGAAAAAGAAAAGGAAAAGAGAGAAAGGGAGGAGAGGGAGAGGGAAAGGGAGAAGAGAGAGCGAGACAAAGAAAGAGACAAGAAGGAACGGGAAAGGGAAAGGGAAAGGGAGAGGGAGAAAGACAGGGAAAGGGAAAGGGAGAGGGAGAAAGAAAGGGAAAGGGAGAAAGAAAGGGAAAGAGAGAAAGACAGGGAAAGGGAGAAAGAAAGGGAAAGGGAAAAAGAAAGGGAAAGGGAGAAAGAAAGGGAAAGAGAGAAAGACAGGGAAAGGAGAATTCGTGAAAAAGAGAAGCGGAAGGAAATGGATTGTGATTATGGTGATGATGATTCCCGGGATCATGGCAGGAAGAGGCATAGAAAAGACGATGATGACCGTAAGGAGAGATCACGTGAAAGGAGCACCAGTAAGTCAAGTAGATACAAAGATGACAGTGATGGTAGCCCTAGGAAGAGTGCTGCTACTGCTGCTGACTCTGATCAGAAAGATGTAAAACCCTCCCCCACTCATGAGGAGGAGATGGAGGCAGAACACAAGAGGCTGGATGAGGAGATGGAAAAAAGGAGGAGAAGAGTCCAGGAATGGCAGGAGCTGAGGAGGAAGAAGGAAGAAGCTGAAAGAGAAAAGCAAGGTGAAGTGGTTGCTGATGAAACCAAGACCGCCAAGGCATGGACACTTGAAGGAGAGTCTGATGACGAAGAAGGCAATGCTGCAGCTGGGAAATTGGAAGCAGACATGGATATTGATGAAGACAAGAAGCCTGCTACTAAAGAGGATGGGGACATGACGATGGTGGATATTGATAATGGAGTACTAGATGGGGGTTTGCAGAATGGAGTCGAGAGTGCTCCTGTTGAAGATGATATTGATCCCTTGGATGCTTTTATGAACTCTATGGTGTTGCCTGAAGTTGAGAAGCTCAATAACGCTGTGGCCCCTTCCACTGCTGATGGTATAAGCACAGAAATAAAAACTGTGGGGACAAAATTGGAGCAGGGTAATGGTCAGAAAGTGGGTAGAGGCTCTAATAAGTCTATTGGGAGAATAATTCCTGGTGAAGATTCTGATTCAGATTATGAAGACATAGAGAACGATGGGGATCCTTTAGAAGATGAAGACGATGATGAATTCATGAAAAGAGTGAAGAAGACTAAAGCAGAGAAGCTGTCCATTGTCGATCACTCAAAGATTGATTACAAACCATTTAGGAAAAATTTCTACATTGAAGTGAAGGAAATTTCAAAGATGACTTCCGAGGAAGTTGCTGCATACAGGAAAGAGTTAGAATTGAAGATACATGGAAAAGATGTTCCCAAGCCTGTCAAGTTATGGCACCAAACTGGCCTTACTAGTAAAATCTTGGAGACAATTAAGAAGCTTGGTTTTGAAAAGCCAATGCCCATTCAAGCCCAGGCACTCCCTGTAATAATGAGTGGTAGAGACTGTATAGGCATTGCAAAAACCGGCTCTGGAAAGACACTTGGTTTTGTACTTCCAATGCTGAGACATATCAAGGACCAGCCTCCTGTTGTTGCTGGAGATGGACCAATTGGGCTTATAATGGCACCTACACGGGAACTTGTCCAGCAGATTCACAGTGATATAAGAAAATTCACCAAGGTTCTTGGTATTAGGTGTGTACCTGTATATGGAGGCTCAGGCGTTGCTCAACAAATCAGCGAATTGAAGCGAGGTACTGAAATCGTGGTTTGCACTCCTGGCAGGATGATTGACATACTCTGTACAAGCAGTGGGAAAATTTCTAATCTTCGTAATGTTACATATTTGGTCATGGATGAGGCAGATCGGATGTTTGATATGGGGTTTGAACCCCAAATTACTCGCATTGTTCAAAATATACGTCCGGATCGTCAAACTGTTCTGTTCTCTGCCACCTTCCCTCGACAAGTTGAAATATTGGCGCGTAAAGTTTTGAACAAACCTGTGGAGATTCAGGTTGGTGGTAGGAGTGTTGTGAACAAGGACATAGCTCAGTTAGTCGAAGTGAGGCCAGAAAATGAGCGGTTCTTGAGACTCCTAGAACTATTAGGGGAATGGTATGAGAAAGGGAAGATTTTGATTTTTGTACACACACAGGAGAAATGTGATGCTTTGTTCAGGGATTTGCTGAGGCACGGTTATCCATGCCTCTCACTTCACGGGGCTAAGGATCAGACTGATCGTGAATCTACAATTTCTGATTTCAAAAGCAATGTATGCAATTTGTTGATAGCTACAAGCATTGCTGCCAGAGGTTTGGATGTTAAGGAGCTGGAACTTGTAATAAATTTTGATGTCCCAAACCACTATGAAGATTATGTACATAGAGTAGGACGCACTGGCCGTGCTGGTCGCAAGGGTTGTGCTATCACATTTATATCTGAGGAAGATGCTAGATATGCACCAGATCTTGTGAAAGCGATGGAGCTATCTGAACAGGTTGTTCCAGATGACCTAAAAGCTATTGCTGACGGTTTCATGGCCAAGGTGAATCAAGGATTGGAGCAGGCTCACGGAACAGGCTATGGAGGCAGTGGTTTTAAGTTTAATGAAGAAGAAGATGAAGTTAGGAGAGCAGCAAAGAAAGCGCAGGCTAAGGAATATGGTTTTGAGGAAGATAAGTCTGATTCAGAAGATGATGATGACGGTATCCGCAAGGCACATGGTGACATTTCTCAAAATGCTGCACTTGCTCAGATAGTTTCTGCTTCTCTCATACCTAATGCTGGGCAAAAATCATCAACTGTGCCTGGTCAATTAATCGCAGGGCATGGACTTTCTTATATTGTTAATGATGGTGCTGCACAGGCTGCATTACGTGCTGTTATGAATTTGCAGGAGAACTTGAGACAGATTCAAGCTACTGCCATGCCTGAACACTATGAAGCAGAGTTGGAAATAAATGATTTTCCACAGAATGCAAGATGGAAAGTTACACACAAGGAGACTTTGGGACCTATATCTGAGTTTACTGGAGCAGCCATAACTACCAGGGGGCAATTTTTCCCCCCTGGGAAGGTTCCTGGACCTGGGGAACGGAAGTTATATTTGTTTATTGAGGGGCCTTCTGAGAAGTCCGTGAAGAACGCCAAAGTGCAGTTGAAACGTGTGCTTGAAGACATTACAAGTCAGGCTTTGCAAATTCCTGGGGGTGGCCAACCAGGCAGATACTCTGTTTTATGA 3498 0.446 MDEGKQKSRKEESDRKGEVRRSHRDHRDREKSKDSKPKDRDRGRDRHRDRDRKEGRSRHHDRESSSSSSSSSGSESDRERERDRGKEKRRDKKRDKDHDGRRERAREKEKEKREREEREREREKRERDKERDKKEREREREREREKDREREREREKEREREKEREREKDREREKEREREKEREREKEREREKDRERRIREKEKRKEMDCDYGDDDSRDHGRKRHRKDDDDRKERSRERSTSKSSRYKDDSDGSPRKSAATAADSDQKDVKPSPTHEEEMEAEHKRLDEEMEKRRRRVQEWQELRRKKEEAEREKQGEVVADETKTAKAWTLEGESDDEEGNAAAGKLEADMDIDEDKKPATKEDGDMTMVDIDNGVLDGGLQNGVESAPVEDDIDPLDAFMNSMVLPEVEKLNNAVAPSTADGISTEIKTVGTKLEQGNGQKVGRGSNKSIGRIIPGEDSDSDYEDIENDGDPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYKPFRKNFYIEVKEISKMTSEEVAAYRKELELKIHGKDVPKPVKLWHQTGLTSKILETIKKLGFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLGFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIRKFTKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKISNLRNVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILIFVHTQEKCDALFRDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKAMELSEQVVPDDLKAIADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDDDDGIRKAHGDISQNAALAQIVSASLIPNAGQKSSTVPGQLIAGHGLSYIVNDGAAQAALRAVMNLQENLRQIQATAMPEHYEAELEINDFPQNARWKVTHKETLGPISEFTGAAITTRGQFFPPGKVPGPGERKLYLFIEGPSEKSVKNAKVQLKRVLEDITSQALQIPGGGQPGRYSVL* 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01454 1165 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 578 756 IPR014001 -
Pte3g01454 1165 MobiDBLite consensus disorder prediction 268 369 - -
Pte3g01454 1165 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 784 928 IPR001650 -
Pte3g01454 1165 Pfam Helicase conserved C-terminal domain 781 889 IPR001650 -
Pte3g01454 1165 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 905 IPR027417 -
Pte3g01454 1165 Coils Coil 276 313 - -
Pte3g01454 1165 Gene3D - 499 756 IPR027417 -
Pte3g01454 1165 MobiDBLite consensus disorder prediction 437 478 - -
Pte3g01454 1165 Coils Coil 101 204 - -
Pte3g01454 1165 SMART ultradead3 566 771 IPR014001 -
Pte3g01454 1165 Gene3D - 757 931 IPR027417 -
Pte3g01454 1165 MobiDBLite consensus disorder prediction 1 392 - -
Pte3g01454 1165 SMART helicmild6 808 889 IPR001650 -
Pte3g01454 1165 MobiDBLite consensus disorder prediction 963 992 - -
Pte3g01454 1165 Pfam DEAD/DEAH box helicase 572 743 IPR011545 GO:0003676|GO:0005524
Pte3g01454 1165 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 702 710 IPR000629 -
Pte3g01454 1165 CDD SF2_C_DEAD 768 898 - -
Pte3g01454 1165 MobiDBLite consensus disorder prediction 461 478 - -
Pte3g01454 1165 FunFam probable ATP-dependent RNA helicase DDX17 509 759 - -
Pte3g01454 1165 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 547 575 IPR014014 GO:0003724
Pte3g01454 1165 Coils Coil 1040 1060 - -
Pte3g01454 1165 MobiDBLite consensus disorder prediction 1 65 - -
Pte3g01454 1165 CDD DEADc_DDX46 536 757 - -
Pte3g01454 1165 MobiDBLite consensus disorder prediction 963 977 - -
Pte3g01454 1165 MobiDBLite consensus disorder prediction 74 254 - -
Pte3g01454 1165 CDD KH-I_AtRH42_like 1062 1164 - -
Pte3g01454 1165 PANTHER RNA HELICASE 491 967 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01454 Pte-Chr3 12747419 12755163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01454 545 909 Eukaryotic Initiation Factors Gene Family AT3G19760 33.604 8.26e-58 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01454 K12811 - gmx:100784306 1434.85