Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01417 ATGGCTCTACTAACTTTTTTGCCAGAGCAGACAGACCCCAAGAAACAACCTTCGAAACGCAAGCACAAGCACAAGCAGAAGAAACCACCCTCTTCATGGGATCAAATCAAGAACATGTTGACCTGTAAACAGATCGAAGGTTCGGGAGTGCATGACCCATCAAAAAGTGCAGCAGAGGGCTACTCCAAGTTAGGTTCTTCTTGCAGGTCAATATGTAGCTTTAAAGACGTCGCTCATGGTAACACCCGAGTGGTTCATAAGTCTGATAACTCTTCGCCGGAGAGCAGCTCTCTGGGTCAGGAAATTGGACTACTGAGACGGAAAGCATTAGCTAATGGCTCATCAAATCGGTCGGTGTCAGGGTCAACGAGATCTCATGGTGGAGTGACGCAACCCTCATGTTCCAGTGGAATGCAATTCAGGAAGCTTTCTGGATGTTATGAATGTCGCATGATCGTTGACCCCAGCAGGCTTCCGATTTCAAGAACCACTATATGCGCTTGCTCTGTGTGCGGTGAGGTCTTCCCCAAGATCGAAAGCTTGGAGCATCATCAAGCTGTTCGACATGCTGTGTCGGAGCTGGGTCCAGAGGATTCGGGTCGAAACATAGTGGAGATTATCTTCAAATCGAGCTGGCTCAAGAAGGATAGCCCTATCTGTAAGATCGAACGGATATTAAAGGTCCACAATACTCAACGGACCATCCAAAGGTTCGAGGGCTGTCGAGATGCGGTGAAGGCACGTGCCCTCAACAGCACCAAGAAAAACCCCAGGTGTGCAGCTGATGGGAACGAGCTTTTACGCTTTCACTGCACCACCTTGTCGTGCGTTCTTGGTGCACGTGGCTCTTCCAGCTTATGCGGTAACATACCCGGCTGTGGAGTCTGCACCGTCATCAGGCACGGTTTCAAAGGCAAGAAGCAACCAGTTGGAGGTGAATGTGGCGGTAATGTAGAAGGAGGCAACTGTACTGGTGTCTCCGCTGTAGGCACCGGTGGCGACAGTCAGTGCAAGGGAGTGTGGACCACTGCCAGTAGCGGTAGGGCCCACGACTCCTTAAATTGCAGTCATGACGTAAGGGCAATGCTGGTCTGCCGTGTAATTGCAGGGAGGGTGAAGCGCGTAGAGGATGATGCGCCACCGGAGGAAGAGGCTGCTTTGTTGGCCAATAGTTCCTACGATTCTGTAGCCGGGTACGCCGGGATATACTCGAATCTTGAGGAGCTGATTGTTTTTAATCCCAGGGCTATTCTTCCTTGTTTCGTAGTCATTTACAAAGTACTGCTCCCATCTTAA 1296 0.5046 MALLTFLPEQTDPKKQPSKRKHKHKQKKPPSSWDQIKNMLTCKQIEGSGVHDPSKSAAEGYSKLGSSCRSICSFKDVAHGNTRVVHKSDNSSPESSSLGQEIGLLRRKALANGSSNRSVSGSTRSHGGVTQPSCSSGMQFRKLSGCYECRMIVDPSRLPISRTTICACSVCGEVFPKIESLEHHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKKDSPICKIERILKVHNTQRTIQRFEGCRDAVKARALNSTKKNPRCAADGNELLRFHCTTLSCVLGARGSSSLCGNIPGCGVCTVIRHGFKGKKQPVGGECGGNVEGGNCTGVSAVGTGGDSQCKGVWTTASSGRAHDSLNCSHDVRAMLVCRVIAGRVKRVEDDAPPEEEAALLANSSYDSVAGYAGIYSNLEELIVFNPRAILPCFVVIYKVLLPS* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01417 431 SUPERFAMILY ADP-ribosylation 191 426 - -
Pte3g01417 431 Gene3D - 182 427 - -
Pte3g01417 431 MobiDBLite consensus disorder prediction 112 135 - -
Pte3g01417 431 MobiDBLite consensus disorder prediction 1 36 - -
Pte3g01417 431 ProSitePatterns Zinc finger C2H2 type domain signature. 166 189 IPR013087 -
Pte3g01417 431 FunFam C2H2-like zinc finger protein 190 426 - -
Pte3g01417 431 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 31 425 - -
Pte3g01417 431 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 194 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01417 Pte-Chr3 12406904 12409367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01417 1 428 C2H2 Transcription Factor Family AT1G75710 59.751 3.35e-172 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte3g01417 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01417 - - qsa:O6P43_018676 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01417 3 12406904 12409367 Pte3g01417 3 12406904 12409367 RCT