Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01411 ATGTCGACCGGACTAGGAAAATGCAGGAAGATTCGCCACATCGTGAGGCTTCGCCAATTGCTCAGGCGGTGGCGCAACAAGGCTCGCATGTCGTCAGCCAATCGCGTACCCGCTGATGTCCCTGCCGGTCACGTGGCGGTGAGTGTTGGCTCCAGCTGTAGGAGATTTGTGGTGCGCGCCACTTACCTAAACCATCCTGTCTTCAAGAAACTGCTGGTACAAGCAGAGGAAGTGTATGGCTTCACCAACCAAGGCCCTCTTGCTATTCCTTGCGACGAGTTGCTGTTTGAAGAGATACTCCGATACATCTCACACTCCGAATCCGGTAACACGGCCTGGTTCGTAAACCTTGAGGACTTTCAGAGTTACTGCCACGTGGGCATTCGCATTAATCTGGACTTGTTATCGGACTCTAGACCGCTGCTCCAATAA 432 0.5301 MSTGLGKCRKIRHIVRLRQLLRRWRNKARMSSANRVPADVPAGHVAVSVGSSCRRFVVRATYLNHPVFKKLLVQAEEVYGFTNQGPLAIPCDELLFEEILRYISHSESGNTAWFVNLEDFQSYCHVGIRINLDLLSDSRPLLQ* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01411 143 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 29 99 IPR003676 GO:0009733
Pte3g01411 143 Pfam Auxin responsive protein 16 102 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01411 Pte-Chr3 12330474 12330905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01411 5 142 Calmodulin-binding Proteins AT4G34750 51.389 4.22e-45 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01411 K14488 - cave:132190292 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01411 3 12330474 12330905 Pte3g01411 3 12330474 12330905 RCT