Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01395 ATGAAGATCGTTTGCGACGTGTGTGACAGTGACGAGGCCTCGGTCTTCTGCACTGACGATGAAGCAGCTCTTTGCAACGCTTGCGACCATGGCGTCCATCATGCCAACAAGCTCGCCTCCAAACACCGACGCTTCTCTCTTCTCCAACCTTCTCCTAAGCAACTTCCTCTCTGCGATATTTGCCTGGAGAGAAAAGCTTTCTTGTTCTGTCAGCAGGATAGAGCGATTCTGTGCAGAGAGTGTGATGCACCGATTCACTCAGCCAACCAACATACCCAGAAGCATGACAGGTTTCTTCTTGCGGGAATGAAAGTCTCTGTTACTGCTTCGCTGTATTCGTCATCACCATCCAATGCAAATACTGTAGCTCATACACCTGATCGTGTTTCTCAGCATCCCAATTCTCGATCATCTGTCAAGTGCTCTGTTTCCGGTGCTCCATCCGTAGCACATCCACTGATGCCTGCTAAGATCGTTCCTTCACCGATCTTGAGCATGCCTATCATCAAGACCGTTGGAAATGTCGTAGATGAAACTGCAGGTTTTGATGGGTCAGGAAGCAGCATAGCGGAGTACTTGATAGAGACTCTTCCTGGTTGGCACGTTGAGGATATCCTAGATTCTTCTGCTACCTCTGGTTTCTATAGCAAGAATGATGATGGGCTCCTAGATAGTGTAATTGAGAGCAACTTGGGATCTTTGGCACAGCAAAGCGGTGAAGATTGGGTACCTCAAGCACCCGATTCTCACTACTTTGCACAAATGGTAGGGCAGATTGGATTCAACTTCGAAAAGGAGACCCAAAATGTAAGAGATACTGTACCAATCTCGAGGGATGATGTCTTCACAGTTCCACAGATTAGCTCTGCGTCCGTACTCCGTTGCTAG 888 0.4797 MKIVCDVCDSDEASVFCTDDEAALCNACDHGVHHANKLASKHRRFSLLQPSPKQLPLCDICLERKAFLFCQQDRAILCRECDAPIHSANQHTQKHDRFLLAGMKVSVTASLYSSSPSNANTVAHTPDRVSQHPNSRSSVKCSVSGAPSVAHPLMPAKIVPSPILSMPIIKTVGNVVDETAGFDGSGSSIAEYLIETLPGWHVEDILDSSATSGFYSKNDDGLLDSVIESNLGSLAQQSGEDWVPQAPDSHYFAQMVGQIGFNFEKETQNVRDTVPISRDDVFTVPQISSASVLRC* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01395 295 Gene3D Classic Zinc Finger 1 99 - -
Pte3g01395 295 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pte3g01395 295 SMART bboxneu5 53 100 IPR000315 GO:0008270
Pte3g01395 295 FunFam B-box zinc finger protein 21 1 98 - -
Pte3g01395 295 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 289 - -
Pte3g01395 295 CDD Bbox1_BBX-like 57 100 - -
Pte3g01395 295 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pte3g01395 295 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Pte3g01395 295 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Pte3g01395 295 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Pte3g01395 295 MobiDBLite consensus disorder prediction 117 137 - -
Pte3g01395 295 CDD Bbox1_BBX-like 4 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01395 Pte-Chr3 12169248 12170439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01395 1 288 C2C2-CO-like Transcription Factor Family AT1G75540 43.636 1.87e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pte3g01395 zf-B_box 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01395 - - zju:107420377 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01395 3 12169248 12170439 Pte3g01395 3 12169248 12170439 RCT