Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01387 ATGATGACTTCGTCTTCAAGGGATCAGAAACTTGTTTTTCATTCTGAAACGTCATCTCATCATGCTGGTGCTGGAAATATTTTGATGTACCTCAATCAAACTTCTTCCGGATCCTACTCAGATGTGCTGTCTGTGAACATGCAATCCATTGGTGGGGAGTCCAAAAGTGAACATGCTATGTTGACTTCAAGGGGACTGCTGAATAATGAGCAGAGTATTCATTCTCGAGGATCATCTCTCAGCCTTGGCTCCCGTGTGCCTTCTGCTGTTCCCGTGCCTTCTTTTCAATCCCAGTTTTCCTATCCTGCTCTCTCCTCACCGTTGTACCTTTCTCATTCAATTTCTGAAAAGGGGGAATTGTCACAAAAATATGATGAGACCTCTGTAAATGAGGATTTTAGAAGTACTGAATGCATGTCTTGTGGGGTCTCTTGTTTCTGCAATCCTAATTCTTCTATACCTACTTCAGAAATCTTGTCTGATCCATTGATGTTTGGATCACAAGGCTATGCAAATACTATATTGAATTCGAAATATCTTAGGCCAGTACTAGAGTTGCTTGATGAGACGGCCAATGTGCAAAAGGCATTGAAGCTGTCAGGATCAGGAAAAAATAAAATCTCACCTGATATTCGTTCGGATGGCTCCAAAGATCTCAATGAAAGATCGAATAGCCTATCACAACAGACATCCTCAGGTTCTGGAATCCCAACTTCCAACTCCTCTTTAAGTGAGCTATCACCTTCTGAACGACAAGATTTAATGGATAGAAAGGCAAAACTTGTGTCCATGTTGGATGAGGTTGATGAGAAATACAGACAATACTGCCACCAAATGCAAATTGTGGTTTCATCTTTTGACATGGTTGCTGGACGTGGGGCAGCTGAGCCCTACACTGCACTTGCATTACGTGCTATCTCCCGGCAATTTCGCTGTTTACATGATGCCATTAGCTGCCAGATTCAACTAATTCAGAGAAAACTTGGGGAACAAGAGGGGATACCTCGTCTACGTTACGTGGACCAGCAACTCAGACAACAGAGATCTCTCCAGCAACTTGGTGTAATGAGACAGGCTTGGAGGCCACAGAGGGGACTTCCTGAAAGCTCTGTCTCAATCCTTCGTGCTTGGCTATTTGAGCATTTCCTCTATCCTTACCCTAGGGATTCTGAGAAATTTGCTCTGGCAAGGCATACAGGCTTGTCAAGAAACCAGGTAGCCAATTGGTTCATTAATGCACGTGTTCGTCTTTGGAAGCCAATGATTGAAGAAATCTACATCGAAGAGTTTGGCAAATCTAAAATGCTCCGGAATTCACAGGAAAATGTACCACTGAAAGATTCGAGAGATGAGGTTCAAGCATCCAAGGATAGAGAGAAAGAATATCAGAACACAATGCCTGGAAGCCTTCCTTATGTCCACCTTAGTCAATCTAATCGTACATCTACTATGGATGTACCGGCAAGCAGGGCGGGGTTTGTAATTCATGGAAATGATGCGGTGGGTTACAGAATTTCAAAATCACCAGAAAACCAAAGATCTAACGTGGACAAAAGTAATTGTTATTCAGTTGAAAATATGGCATCCAATCAGATAGATGGTGACAGTCTTATGAGTACTTCTGGTGCACCATATGATTTATCAGAATTGTGTAATTTAGCCATGAATGGTCAGGTGTCACTTGCACTGGTATCACGGGTTGGGTGGGGTCAACAAAAGTGTTAA 1725 0.4267 MMTSSSRDQKLVFHSETSSHHAGAGNILMYLNQTSSGSYSDVLSVNMQSIGGESKSEHAMLTSRGLLNNEQSIHSRGSSLSLGSRVPSAVPVPSFQSQFSYPALSSPLYLSHSISEKGELSQKYDETSVNEDFRSTECMSCGVSCFCNPNSSIPTSEILSDPLMFGSQGYANTILNSKYLRPVLELLDETANVQKALKLSGSGKNKISPDIRSDGSKDLNERSNSLSQQTSSGSGIPTSNSSLSELSPSERQDLMDRKAKLVSMLDEVDEKYRQYCHQMQIVVSSFDMVAGRGAAEPYTALALRAISRQFRCLHDAISCQIQLIQRKLGEQEGIPRLRYVDQQLRQQRSLQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLYPYPRDSEKFALARHTGLSRNQVANWFINARVRLWKPMIEEIYIEEFGKSKMLRNSQENVPLKDSRDEVQASKDREKEYQNTMPGSLPYVHLSQSNRTSTMDVPASRAGFVIHGNDAVGYRISKSPENQRSNVDKSNCYSVENMASNQIDGDSLMSTSGAPYDLSELCNLAMNGQVSLALVSRVGWGQQKC* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01387 574 Pfam Homeobox KN domain 377 416 IPR008422 GO:0003677|GO:0006355
Pte3g01387 574 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 71 448 - -
Pte3g01387 574 MobiDBLite consensus disorder prediction 201 251 - -
Pte3g01387 574 Pfam Associated with HOX 174 318 IPR006563 -
Pte3g01387 574 ProSiteProfiles 'Homeobox' domain profile. 357 420 IPR001356 GO:0003677
Pte3g01387 574 SMART prehox3 168 319 IPR006563 -
Pte3g01387 574 Gene3D - 363 425 - -
Pte3g01387 574 Coils Coil 445 465 - -
Pte3g01387 574 CDD homeodomain 360 421 IPR001356 GO:0003677
Pte3g01387 574 MobiDBLite consensus disorder prediction 441 472 - -
Pte3g01387 574 MobiDBLite consensus disorder prediction 443 463 - -
Pte3g01387 574 SUPERFAMILY Homeodomain-like 361 426 IPR009057 -
Pte3g01387 574 MobiDBLite consensus disorder prediction 220 249 - -
Pte3g01387 574 SMART HOX_1 360 424 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01387 Pte-Chr3 12076759 12080001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01387 76 441 Homeobox Transcription Factor Family AT1G19700 48.438 3.21e-100 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pte3g01387 POX 3.4e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01387 - - gmx:100775682 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01387 3 12076759 12080001 Pte3g01387 3 12076759 12080001 RCT