Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01375 ATGACAGTGAATTTCGAAAGCATCGTACGTGAGCTCAGGGCGATACGAGATAATGTGGGAAACATATCCAGAAGAGGTGCCACCAGAAAATGTATCACTCGCAAGGGAAAGTCTCATATTGCACCAGAATGCTCCTCAATATCCCCGCCCTTAGAGGCACCTATGGCGGACCTGAAGCTTCAGCATAGTGGCTGGGACTGCTTGCCACCTGAGTTACTTTCGGATATAATCCAAAGGGTGGAAGCTAGTGAGACTTCATGGCCGGGCCGAAGAGCTGTTGTCGCTAGTGCATCAGTTTGTAGGTCTTGGAGACAGACGACCAAGGAGGTTGTCAAGACACCAGAACAGTGCGGGTGGCTCACCTTCCCGATATCACTGAAGCAGCCTGGGCCAAGTGATGCTCCAATTCATTGCTTTATTAGGAGGAACAGACAAACATCAACCTTTCAACTGTACCTTGGTCTGAGTCCTGCTCTTTCTGGGGATTCAAGTAAATTACTTCTGGCAGCTAAGAAAATTAGAAGAGCCACATTTACAAACTTCTTAATATCCTTGGTTCCAGATGATTTCTCGCGAACAAGCAGCGCGTACATTGGAAAACTGAGGTCTAATTTCCTGGGGACCAAGTTCACCATTGTTGATAAGCAGCATCCCCAGCACCTTGTGGGTCATTTAAACTCTACGTCGCTGAAGCAAATCACTCACAATCATCTCTCTCCAACAACTGCTGCTGCTAAATACAGTGCGGGGACGATATCTTATGAGCTAAATGTTCTCCGTACCAGAGGTCCAAGAAGAATGTGGTGCATTATGCATTCTGTCGAGGTGAATGGAATCCAAGAAGGGCCGACTCCTGTGGAACGCACCTATTGGAACAATGAGCAATTATCCCTTATGGCTTCAAATGAAGATAAGCGGATTGCTGAGTGTAGTTCCAGTAGTGCTGCAGGGCAATTAGAATTAACCCATAGCACGAAACATCCGCTGATTTTGAAAAATAAAGCTCCAAGATGGCATGAGCAGCTGCAATGTTGGTGCTTGAATTTCAAAGGACGAGTTGCAGTAGCCTCGGTGAAGAATTTCCAGCTCGTGGCAGCAGCAGAATCTCAGCGGGATACTTCAGTGACAGAACAAGATACGGTCATACTGCAATTTGGAAAATTTGGGAAAGACATATTCACCATGGATTACCGCTACCCTCTATCAGCCTTTCAAGCCTTCGCAATCTGCTTGAGCAGCTTCGATACCAAACCAGCTTGTGAATAG 1266 0.4652 MTVNFESIVRELRAIRDNVGNISRRGATRKCITRKGKSHIAPECSSISPPLEAPMADLKLQHSGWDCLPPELLSDIIQRVEASETSWPGRRAVVASASVCRSWRQTTKEVVKTPEQCGWLTFPISLKQPGPSDAPIHCFIRRNRQTSTFQLYLGLSPALSGDSSKLLLAAKKIRRATFTNFLISLVPDDFSRTSSAYIGKLRSNFLGTKFTIVDKQHPQHLVGHLNSTSLKQITHNHLSPTTAAAKYSAGTISYELNVLRTRGPRRMWCIMHSVEVNGIQEGPTPVERTYWNNEQLSLMASNEDKRIAECSSSSAAGQLELTHSTKHPLILKNKAPRWHEQLQCWCLNFKGRVAVASVKNFQLVAAAESQRDTSVTEQDTVILQFGKFGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01375 421 Pfam Tub family 126 416 IPR000007 -
Pte3g01375 421 Gene3D Tubby Protein; Chain A 123 421 IPR025659 -
Pte3g01375 421 ProSitePatterns Tub family signature 2. 406 421 IPR018066 -
Pte3g01375 421 PRINTS Tubby superfamily signature 181 197 IPR000007 -
Pte3g01375 421 PRINTS Tubby superfamily signature 246 273 IPR000007 -
Pte3g01375 421 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Pte3g01375 421 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Pte3g01375 421 PRINTS Tubby superfamily signature 378 397 IPR000007 -
Pte3g01375 421 PRINTS Tubby superfamily signature 399 421 IPR000007 -
Pte3g01375 421 PRINTS Tubby superfamily signature 197 221 IPR000007 -
Pte3g01375 421 PANTHER TUBBY-RELATED 59 419 - -
Pte3g01375 421 Pfam F-box domain 65 111 IPR001810 GO:0005515
Pte3g01375 421 SUPERFAMILY F-box domain 61 127 IPR036047 GO:0005515
Pte3g01375 421 SUPERFAMILY Tubby C-terminal domain-like 114 421 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01375 Pte-Chr3 11984952 11986851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01375 30 422 TUB Transcription Factor Family AT1G47270 59.296 1.03e-156 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte3g01375 Tub 1.6e-99 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01375 K19600 - zju:107420271 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01375 3 11984952 11986851 Pte3g01375 3 11984952 11986851 RCT
Pte3g01375 3 11984952 11986851 Pte2g01248 2 13974925 13976963 RCT
Pte14g00902 14 30758901 30761716 Pte3g01375 3 11984952 11986851 RCT