Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01370 ATGGATTTGGGAGCTTCAGAAAATGAAACAAGCAACCCTGATATCGATCATTCATCCCCGGCAGCGCAAAGACGGGCTATGGATCACAACGGCACCCCATCTATCTTTGGAGAGACACCCTCATCAGATCTTGACCAACCGCACGTTCAAGTACTTCATCAACAACAACGTCGACGGCATCAACCTGGTCAATCTGGTGGAGATCACACTACCTCGGGTCGTTTCCATGACACCAGCTACTGCTTATTCCCTAGTGCAATGGTTTTGGAAAGATCTAAATCAAAGAATTCACAGTCATCAGTGGCGGCAGTACGTGCTGTTCGATACCGAGAATGTCAGAAGAACCATGCTGCCAGTGTTGGAGGGAACGTCTTGGACGGGTGCGGAGAGTTCATGCCTAGCGGCGAAGGAGGATCCATTGAAGCTCTGAAGTGTGCTGCTTGTGATTGTCACAGAAACTTTCACAGAAAAGAGGTTGAAGGAGATACAAAATTTGGTACAGGCCCCGGTGGAAGCTCCATTAGCAACATGATGGTCGCTAATGCACTTCAGCTGCCCCCGCCATTGCCGTCCCCCTCTATGTCACATCATCACCATCACAGCAGATTCTCAGGTGGGTTTCCGTATTCTAACAATACCCCACCTGCTATCGTCCAACCCGTGAATGTCGCTTTCGGTGGAAGCACTATGGGAGGAGGGGCCGGAACGGAGTCTTCTAGTGAAGAACTAAATGTGTTCCACTCCAATGCAGAGGCTGCGGTGCCTCCCCCGCCGTTTCCTTTGGGGAAGAAGCGGTTCCGGACAAAATTCACTCACGAACAGAAGGCGAGAATGCTGGAGTTTGCAGAGAAACTAGGGTGGAGGATTCAAAAGCAAAGTGAGGAACAGGTGGATAGGTTTTGCGCTGAGATAGGAGTGAAGAGGCAAGTTTTCAAGGTTTGGATGCACAATAACAAGAACAACTCCATGAAAAAACATCTTGAAGGAAGTTACATGCAATCTCTGGACATATCTGATCCACAAGATCAGGATCAGGAGGGAGGAGAGGAAGATGGGTAG 1059 0.4929 MDLGASENETSNPDIDHSSPAAQRRAMDHNGTPSIFGETPSSDLDQPHVQVLHQQQRRRHQPGQSGGDHTTSGRFHDTSYCLFPSAMVLERSKSKNSQSSVAAVRAVRYRECQKNHAASVGGNVLDGCGEFMPSGEGGSIEALKCAACDCHRNFHRKEVEGDTKFGTGPGGSSISNMMVANALQLPPPLPSPSMSHHHHHSRFSGGFPYSNNTPPAIVQPVNVAFGGSTMGGGAGTESSSEELNVFHSNAEAAVPPPPFPLGKKRFRTKFTHEQKARMLEFAEKLGWRIQKQSEEQVDRFCAEIGVKRQVFKVWMHNNKNNSMKKHLEGSYMQSLDISDPQDQDQEGGEEDG* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01370 352 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 109 158 IPR006456 -
Pte3g01370 352 Gene3D - 259 324 - -
Pte3g01370 352 FunFam Zinc-finger homeodomain protein 2 259 324 - -
Pte3g01370 352 MobiDBLite consensus disorder prediction 187 207 - -
Pte3g01370 352 SUPERFAMILY Homeodomain-like 260 322 IPR009057 -
Pte3g01370 352 MobiDBLite consensus disorder prediction 34 75 - -
Pte3g01370 352 Pfam ZF-HD protein dimerisation region 107 159 IPR006456 -
Pte3g01370 352 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 85 321 - -
Pte3g01370 352 MobiDBLite consensus disorder prediction 1 75 - -
Pte3g01370 352 MobiDBLite consensus disorder prediction 1 18 - -
Pte3g01370 352 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 108 159 IPR006456 -
Pte3g01370 352 NCBIfam homeobox domain, ZF-HD class 263 320 IPR006455 -
Pte3g01370 352 MobiDBLite consensus disorder prediction 329 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01370 Pte-Chr3 11926000 11927904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01370 102 324 ZF-HD Transcription Factor Family AT1G75240 49.174 3.75e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pte3g01370 ZF-HD_dimer 7.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01370 - - rcu:8288941 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01370 3 11926000 11927904 Pte3g01370 3 11926000 11927904 RCT
Pte3g01370 3 11926000 11927904 Pte2g01246 2 13943999 13944796 RCT