Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01354 ATGCAATGTGAGTTGTGTATTCATTCAGCTTGCTTGATTGCTGCCGCAGCAGTCTCTCTGCTCATCAAGAGAGAATCGTTTGTTTCAACATCATTTTTCCTACTCTGTCCCTTTCATCCGTGCAACGATATGTGCCCCCCAAAAGCAGATGAACATATAGAGGATATTGGATTGAATTCTTCTGACGAGGAGTTTATCATGTCCCTTTCAAAAATGATCCAAGGAGCTTCAATCCCTGGCAATGTGATCACAGATGTAAACCCCTTTCATTATCTGCCCTCTGATTTGCCTGATGGTATTTGTTTTTTCATTTGCTCAGAGGTTAGAAAAGATACAGAGTTTGGTTTCTGGAAGAACAAAGGTAAAGCGATAGAAGTACTCACAAATTTTGCTATTACTGGCTGGAAAACGACTTTGGAATTTTATGAGGGTCGGGATCCACATGTTTATAAAACCGATTGGGTCATGCTAGTGTACACAGTACATCTGGAGGGGCAAAGCGAAATTAGAACAAAGGGCGCCTACTGTTTGTGCAAAGTCTTTTGTGGAAATAGGCTGGTTGAGGAAAAGAAACCTGTTACTCTTGTTGATACTTGTGAAATTGACCTGGACTCAGCTGAATCTATTGATCCACACAGTAATAGAATCAGAGGGCAGAGATCTATAGCCGATAATGATTCCATGGTGAGAGACAATGGCGAAGATGGAAGACTGAGTATCCCAGATACTGTTCATAATGATTTGTGGGGAAAAGCTGCAAACACAGTAGACTATCTTTCCAGAGGTGACTACTTGGAGTTGCTGGATCTGGAGAATGCAGTCTCAAGATCAAGTTCAGAGAATTCAAGTTGTCTGACAATGTCATCTGATGAATATTTTGATTACCTGGCATTGTTACATGACCTAGAGCGTGAGGATGGAAAAAGAGATGCAGTCTGTAAATATAATATCTCTACAACCAACGTCGCAAATGAGTACATTCAGCTGCCGGCTTGTGAAGGATCTGTTGTTATGAGTCATCAGAACTCGCTACAAACAAAAGAAGTTCCGCGCAGAAGTGTTGGAGAAATCATAGTAGCCAATGAGAAAGCACACTCAGTAAAGGGAGGTCCGTCGAGGATTTCGAATGCGATTGTACCATCGGAAAACAATTCCTCTGTATGGCGTGTAGAAAAGAAGGTTGCGGCGTACAGAATTAAAATGCTGAAGAAGTATCTCTGCTTCATGTGA 1230 0.4163 MQCELCIHSACLIAAAAVSLLIKRESFVSTSFFLLCPFHPCNDMCPPKADEHIEDIGLNSSDEEFIMSLSKMIQGASIPGNVITDVNPFHYLPSDLPDGICFFICSEVRKDTEFGFWKNKGKAIEVLTNFAITGWKTTLEFYEGRDPHVYKTDWVMLVYTVHLEGQSEIRTKGAYCLCKVFCGNRLVEEKKPVTLVDTCEIDLDSAESIDPHSNRIRGQRSIADNDSMVRDNGEDGRLSIPDTVHNDLWGKAANTVDYLSRGDYLELLDLENAVSRSSSENSSCLTMSSDEYFDYLALLHDLEREDGKRDAVCKYNISTTNVANEYIQLPACEGSVVMSHQNSLQTKEVPRRSVGEIIVANEKAHSVKGGPSRISNAIVPSENNSSVWRVEKKVAAYRIKMLKKYLCFM* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01354 409 ProSiteProfiles NAC domain profile. 52 183 IPR003441 GO:0003677|GO:0006355
Pte3g01354 409 Pfam No apical meristem (NAM) protein 60 160 IPR003441 GO:0003677|GO:0006355
Pte3g01354 409 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 60 235 - -
Pte3g01354 409 Gene3D NAC domain 61 186 IPR036093 GO:0003677|GO:0006355
Pte3g01354 409 SUPERFAMILY NAC domain 60 182 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01354 Pte-Chr3 11840879 11844294 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01354 58 181 NAC Transcription Factor Family AT1G65910 32.867 4.37e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte3g01354 NAM 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01354 - - jre:108991691 227.254