Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01343 ATGGGTTGGCTTAGCAAAATTTTTAAAAGCTCTGGTCAAAAGGATTCTGTGGGGCATTATGATTCAAATCATGGAGAGAACACAAACTTTTGTCCACCATCTACATCCAAGGGCTTGACAGTGGACGATGAAAATGAAGAAATAGATCGTGCCATTGCATTATCTCTTATAGAAGAAAGTCAAGGAGGGAAAAATGTGGTTGGTGTTAGTAATTTGCAACTAGAAGAAGATGAGCAACTTGCCAGAGCACTACAAGAAAGCCTAAATGTGGAGTCTCCTGCCCCTCCCAGATGTGGAAATGGAAGCATTTATCAACCTGCATCAGTCTATTTCCCCATGGGATACAGGATCTGTGCTGGCTGCAACTCTGAGATTGGTTATGGACGGTATTTAAATTGCCTGAATGCATTTTGGCATCCAGAGTGTTTCCGCTGCCATGCTTGCAATCATCCAATTTCTGATTATGAGTTCTCCACCTCTGGAAGTTATCCTTACCATAAATCTTGTTACAAGATGAACTACCATCCAAAATGTGATGTCTGCAAGCACTTTATTCCAACAAACACTGCTGGTCTTATTGAATATAGGGCACATCCTTTTTGGATCCAGAAATATTGCCCTTTTCACGAACACGATGGTACACCCCGCTGTTGCAGCTGTGAGCGAATGGAGCCAAGAGACATGAGATATGTTGCTCTGAATGATGGTAGGAAGCTCTGTCTGGAATGTCTAGATTCCGCGATCATGGATACCAGCGAATGCCAACCTCTGTATAATGATATACAAAGATTTTATGAAAGTCTAGACATGAAAATAGACCAACGAGTTCCCTTACTTTTGGTTGAAAGGCAAGCACTGAATGAAGCAAGGGAGGGGGAGAAGAATGGCCATTATCACATGCCCGAGACCAGAGGGCTTTGCCTTTCCGAGGAGCAAACTATCAGCAGTATATCAAGACGACCTAGATTTGGAGCAGGAAATCGAGCAATGGACATGAGAACGGAACCCTATCGGCTGACTCGACGGTGTGAAGTAACAGCTATACTTATCTTGTATGGCCTTCCAAGGTTGCTTACTGGGTCAATATTGGCTCACGAGATGATGCATGCCTGGCTGCGACTTAAAGGTTACCGAACACTTGGTCAAGATGTAGAAGAAGGTATCTGTCAAGTTCTAGCTCATATGTGGTTGGAGAGTGAGCTTCACTCTAAATCTGGAAGTAGTTTTCCATCAACTTCATCCTCCACATCCTCGGTAGGGGCTGCAATTCAACATGGTACTGGAACTCAGTTTGATGGGAAGCTTGGAGAGTTTTTTAAGCACCAAATTGAATCAGACATCTCCCCAATATATGGAGATGGATTTAGGGCAGGTCAACAAGCAGTGCTTAAGTATGGTCTGCGATGTACACTTGATCATATTCGGATGACTGGAACCTTTCCATATTAA 1449 0.4334 MGWLSKIFKSSGQKDSVGHYDSNHGENTNFCPPSTSKGLTVDDENEEIDRAIALSLIEESQGGKNVVGVSNLQLEEDEQLARALQESLNVESPAPPRCGNGSIYQPASVYFPMGYRICAGCNSEIGYGRYLNCLNAFWHPECFRCHACNHPISDYEFSTSGSYPYHKSCYKMNYHPKCDVCKHFIPTNTAGLIEYRAHPFWIQKYCPFHEHDGTPRCCSCERMEPRDMRYVALNDGRKLCLECLDSAIMDTSECQPLYNDIQRFYESLDMKIDQRVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEEQTISSISRRPRFGAGNRAMDMRTEPYRLTRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLGQDVEEGICQVLAHMWLESELHSKSGSSFPSTSSSTSSVGAAIQHGTGTQFDGKLGEFFKHQIESDISPIYGDGFRAGQQAVLKYGLRCTLDHIRMTGTFPY* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01343 482 CDD LIM 145 220 - -
Pte3g01343 482 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 110 143 - -
Pte3g01343 482 Gene3D Cysteine Rich Protein 112 174 - -
Pte3g01343 482 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 43 62 IPR003903 -
Pte3g01343 482 Pfam Protein DA1 268 477 IPR022087 -
Pte3g01343 482 MobiDBLite consensus disorder prediction 9 40 - -
Pte3g01343 482 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 75 94 IPR003903 -
Pte3g01343 482 ProSiteProfiles LIM domain profile. 116 176 IPR001781 -
Pte3g01343 482 ProSitePatterns LIM zinc-binding domain signature. 118 152 IPR001781 -
Pte3g01343 482 CDD LIM_DA1 118 170 - -
Pte3g01343 482 MobiDBLite consensus disorder prediction 9 39 - -
Pte3g01343 482 SMART lim_4 117 169 IPR001781 -
Pte3g01343 482 PANTHER PROTEIN DA1-RELATED 2 3 482 IPR045218 -
Pte3g01343 482 SMART uim 75 94 IPR003903 -
Pte3g01343 482 SMART uim 43 62 IPR003903 -
Pte3g01343 482 FunFam Protein DA1-related 1 112 171 - -
Pte3g01343 482 Pfam LIM domain 118 172 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01343 Pte-Chr3 11647758 11653178 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte3g01343 DA1-like 3.2e-97 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01343 - - qsa:O6P43_016130 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01343 3 11647758 11653178 Pte3g01343 3 11647758 11653178 RCT
Pte3g01343 3 11647758 11653178 Pte2g01196 2 13249128 13253480 RCT