Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01342 ATGGAGATCACTGAGGAGCAGAGAAGACGAGCAGAAGCGAACCGTTTGGCAGCTCTTGCAAAACGTAAAACACGTTTAGAACAGTCTTCCAAGGTTGAGCAACGGAAAGATCCATGGAAGCTATTCAAGTGCCGCAAGTTCTCCCTTGAACACTGCAAATCCACTATTAGGCAATGCAGCCAACAACCGGAAATCATATCGGCCAAACCGGATTCTACGACTCATTTTCTTCATAAATTCATGGTCAGGCTTGAAATATGTTCTCCGGATTCTTTTTCTGTGACCCCACTTCCCTGTAAGGGTTTTCCGCTCCCCGGAGAGGAAGACTGCTTGGGGAGACTGAGCGAGTGTTTGTCTGAGGTAATACCATTACATTATACACAAAATCACGATGGTGGGAAGGCCTGTGTGTACAAGCTAAGTGATTATCGTGCTATCCTGAAATGTTTGAAGATGTCTGCAGCCATTGAGGTTGAAGAAATTCCTTGGCGAACTTTGAATGTTGTTGAAAGGTTTTCGCATTCCTATACTGCAGGGCGTTGGATACCTTGCAATTCCGAACACTTGCCTGATGACAAGGTTGATGAATTGATTGGGAAGCTACCAAAAAAGCTTTTGGGTGTATTGTTGCCTTTCCAACTAGAGGGTTTAAGATTTGGTTTGAGAAGGGGTGGACGCTGTCTTATTGCCGATGAAATGGGCCTGGGGAAAACACTCCAGGCCATTGCAATTGCAGGGTGTTTCATGGATGAAGGTTCTATACTTGTTGTTTGCCCTGCCATCCTTCGCTTTTCTTGGGCAGAAGAACTTGAGCGGTGGCTTCCCTTTTGTGTGCCTTCTGATATTCATTTGGTTTTTGGCCATCAAAACAATCCTTCCAATTTGGCAAGATGCCCTCGAGTTGTTGTTATCTCGTACACAATGCTCCACCGCTTACGGACGAGCATGCTTCAGCAACATTGGGCTCTCATGATTGTTGATGAATCTCATCATGTGCGATGTACTAAGAAATCAGAACCAGGAGAGATAAAGGTAGTTCTTGATGTTGCGTCAAAGGTCAAGCGCATAGTTCTTCTTTCAGGGACACCTTCTTTATCAAGACCGTTTGACATCTATCACCAGATAAACTTACTGTGGCCAGGTTTGCTTGGGGAGACCAAGTATCACTTTGCAAAAACTTATTGTGATGTCAAATTTGGCCATGATTGTCAAGGAAAAACTTTTAAGGACTTCTCAAATGGCATTCGCTTGGTGGAGTTGAATGTGTTACTAAAGCAAAGTGTAATGATAAGACGTTTGAAGGAGCATGTCTTGCTAGAATTGCCACCAAAGCGTCGTCAGATCATAAGATTGCTATTGAAGAAATCTGATATAGTTGCTGCAAAGACTGCCATTCCAGCATCTAATTCTGATGTTCCCGAAAATTGTGTGCCTGAAGACGCCACTTCGGAACTTTCAGATTATTATGATGATGTTGGAGGCTGTAAACTAGGGAAACTCTCATTCCAACAATTGGCTATTGCAAAAATTTCTGGGTTTCGGGAGTGGCTGTCTCTTCATCCCCTCATTGCGGATTGCGTTAATGATAGTACAATGGACTCTGATAAAACCTCTCATTCTCAGAAAATGATCATTTTTGCTCATCATCATAAAGTTCTTGATGGGGTACAGGAATTTTTATGTGAAAAAGAGATCTCTTTTATCCGTATTGATGGAAATACACTTAACAAAGATAGGCAAAACAGAGTAATGTTGTTTCAATCATCAGCAGAGGTTAAAATAGCAATCGTAGGTATACAAGCAGCAAAAGAGGGACTTGATCTCTCATCAGCTCAACATGTTGTGTTCCTGGAGCTACCTCAGTCCCCAAATGACATGTTGCAGGCTGAAGCTAGAGCTCACAGAAGAGGACAAAAAAATGCAGTCAATGTATACATCTTCTGTGCAAAGGATACTGCAGATGACTCCCGTTGGCAAAATATGAACAGAAGTTTGCACCTTGTTTCTTCTACGACCAATGGTAAATATGATGCAATTAAGGAGATTGAGGTTGAAGGTGTTTCTTATTTAGAAACATCTAAAAGGACCGTTGCAGATTGCGACGACAAGTGCTTGGCCAACAGATTTCCCAGAGAAGCTGTGGTAGCATTGAAAGATTTAGCAGACACCAAATCCTTACATATGCTACCAGACCCTTGCATTGTGGATGCTGTGTCTGGGCCAGAGATATACAAGGATTCTGAGCTGGATGCAAATCTTCAAGGTGACATTTGTGAACCTAAAACGCACTGTTCTGATATTTGTTCAGAGCTGGATGAAATTGGTGACAAGCAGAAGTTGACAACTGAGTACAAATTTAGTTCTCATAAGAAAGAAATAGATGGAAACCTACCGGTTCAGCCGATTAAATCTTCTGGAAGTTGCTCTAAACAAATTGACTTTCTGCGGTTCGAGGTAAGCCCATATACTGGAAGGATCCATTTATATGCTTGTGTTCCAGGAACAGATGCACGGCCCAAACCCCTTTTCGAAAATTTCCGCCCAGAGGAACTGGAATCCTTTAGTGCAGCTATTAGTGGAGAAGGTCCAAGCTTTGCATTGTTTAAGGACAAACCAGATCGTATAATTCCTTCTCTTGATTTCATCAAACAATGGAATAGCTTGAGGCCTATCGAGCGAACAAAATTGATGGGAAAACCATTACAACTCCCCTTGACTGCAGAATTGTGTTTTCTAAGTGAAAGCAGTAACCATAATCATGAGGGGCTATTGAAAGGTGGAAGCAAGAGGCGTGTCACGCCCATTGTCGAGATTAGCTATCCTTTACCTACAAATGCTGAATGGAGGAAAGTCCGTCTACGTGGTGGTTATGGGAAAAAGGAAAAAGAGTATACTCAAGGTTGGACTGTGACAGATGACCCACTCTGTAAACTTTGTCAGCTGCCGTGCATGGGTAACAATGCGAGGAAACCTGAATACTTTGAAGATCTTTTCTGTAAGCTTGCCTGCTATGAGGAGTATCGAATAAGGACTAGTAGCAGATCACTCCGTTGGGAACTTTTCCAGGTTGAACAAGGTGTGTGCACCAACTGCCAGTTAGATTGCCATAAACTTGTGGATTACTTAAGACCTTTGTCAGTAGCAAAACGACGGGATTATATTGAGAAAGTAGCACCAAATGTGGCGAAGCATAAGAACTTACTGGAAAAGCTTGTCAAGGATCCAACTGAGGGCAATGCTTGGCATGCAGATCATATCGTTCCTGTATATAAAGGGGGAGGTGAATGCAGATTAGAAAACATGAGAACTCTCTGTGTGGCATGCCACCGTGATGTCACTGCAGCACAAGGTGCTGACCGACGATTGATTAAGGCCAAGGCCAGGCAACTACTAAAAGTGACTTTGACTGAGTTGAGAGCGAGAAGCGGTCAGATCCCTTATGCCACAGAGAATAGCATGAAGGACAGTGGACTACAAGATGTTAACGTGGAAGATCAGCTTCTCGTCGAAGTACCTGGGAGTGCTTACTCTGCAGCTCAATCCAAAGTTCAGGGTGTGGAGACAGAACAGAACCCTCCTAGTAATCATGGTGGTGGCACGCTACTGCAGCACCTGGCCAACACTTGA 3627 0.4329 MEITEEQRRRAEANRLAALAKRKTRLEQSSKVEQRKDPWKLFKCRKFSLEHCKSTIRQCSQQPEIISAKPDSTTHFLHKFMVRLEICSPDSFSVTPLPCKGFPLPGEEDCLGRLSECLSEVIPLHYTQNHDGGKACVYKLSDYRAILKCLKMSAAIEVEEIPWRTLNVVERFSHSYTAGRWIPCNSEHLPDDKVDELIGKLPKKLLGVLLPFQLEGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFMDEGSILVVCPAILRFSWAEELERWLPFCVPSDIHLVFGHQNNPSNLARCPRVVVISYTMLHRLRTSMLQQHWALMIVDESHHVRCTKKSEPGEIKVVLDVASKVKRIVLLSGTPSLSRPFDIYHQINLLWPGLLGETKYHFAKTYCDVKFGHDCQGKTFKDFSNGIRLVELNVLLKQSVMIRRLKEHVLLELPPKRRQIIRLLLKKSDIVAAKTAIPASNSDVPENCVPEDATSELSDYYDDVGGCKLGKLSFQQLAIAKISGFREWLSLHPLIADCVNDSTMDSDKTSHSQKMIIFAHHHKVLDGVQEFLCEKEISFIRIDGNTLNKDRQNRVMLFQSSAEVKIAIVGIQAAKEGLDLSSAQHVVFLELPQSPNDMLQAEARAHRRGQKNAVNVYIFCAKDTADDSRWQNMNRSLHLVSSTTNGKYDAIKEIEVEGVSYLETSKRTVADCDDKCLANRFPREAVVALKDLADTKSLHMLPDPCIVDAVSGPEIYKDSELDANLQGDICEPKTHCSDICSELDEIGDKQKLTTEYKFSSHKKEIDGNLPVQPIKSSGSCSKQIDFLRFEVSPYTGRIHLYACVPGTDARPKPLFENFRPEELESFSAAISGEGPSFALFKDKPDRIIPSLDFIKQWNSLRPIERTKLMGKPLQLPLTAELCFLSESSNHNHEGLLKGGSKRRVTPIVEISYPLPTNAEWRKVRLRGGYGKKEKEYTQGWTVTDDPLCKLCQLPCMGNNARKPEYFEDLFCKLACYEEYRIRTSSRSLRWELFQVEQGVCTNCQLDCHKLVDYLRPLSVAKRRDYIEKVAPNVAKHKNLLEKLVKDPTEGNAWHADHIVPVYKGGGECRLENMRTLCVACHRDVTAAQGADRRLIKAKARQLLKVTLTELRARSGQIPYATENSMKDSGLQDVNVEDQLLVEVPGSAYSAAQSKVQGVETEQNPPSNHGGGTLLQHLANT* 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01342 1208 FunFam SNF2 DNA repair protein, putative 183 431 - -
Pte3g01342 1208 CDD HNHc 1073 1113 IPR003615 -
Pte3g01342 1208 Gene3D - 186 429 IPR038718 -
Pte3g01342 1208 SMART helicmild6 554 637 IPR001650 -
Pte3g01342 1208 Pfam HNH endonuclease 1078 1113 IPR002711 GO:0003676|GO:0004519|GO:0008270
Pte3g01342 1208 Pfam SNF2-related domain 227 457 IPR000330 GO:0005524|GO:0140658
Pte3g01342 1208 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 218 381 IPR014001 -
Pte3g01342 1208 Gene3D - 1001 1132 - -
Pte3g01342 1208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 690 IPR027417 -
Pte3g01342 1208 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1127 - -
Pte3g01342 1208 SMART ultradead3 205 390 IPR014001 -
Pte3g01342 1208 MobiDBLite consensus disorder prediction 1180 1208 - -
Pte3g01342 1208 Pfam Helicase conserved C-terminal domain 537 637 IPR001650 -
Pte3g01342 1208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 432 IPR027417 -
Pte3g01342 1208 Coils Coil 1202 1208 - -
Pte3g01342 1208 Coils Coil 1 23 - -
Pte3g01342 1208 CDD SF2_C_SNF 540 648 - -
Pte3g01342 1208 Gene3D - 518 707 IPR027417 -
Pte3g01342 1208 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 518 688 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01342 Pte-Chr3 11573742 11589536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01342 541 690 RAD5 or RAD16-like Gene Family AT1G11100 31.579 3.14e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte3g01342 SNF2_N 2e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01342 K25861 - qsa:O6P43_001998 1465.67