Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01324 ATGCAGACCCATGCCTCTGATTCACAACCAAAACAGCAACAGCCGGCTGAGTTGAATCAACGGATACCACCGACTCACACGCAGACAAACATTCCAAGGCAGCCAATGCCGCACCCTTTGCCTCCGCCACTGCCTTGGATGGCGATGCAGTACCCGGCGGCAGCTATGATGATGCAGCCACAGATTTTATCGCCTCAACATTACGTTCTTCCGCCGCCGCCTCCGCCGCCACAGCATTACGTGTCGTACCCCCAGTACTATCCTCATCTACCCCACCCTCCTCATCAGAATCAACAGCAGCATCAAGGGTCCAGCGGTGGAGAGAACAAGACGATCTGGGTTGGGGATTTGCACCATTGGATGGACGAGAATTACCTCCATAGTTGCTTCGCTTCCACGGGAGAGATTAGCTCCATCAAGGTTATTCGCAATAAGCAGACCGGTTTGTCAGAGGGATATGGATTTGTTGAATTCTTTTCACACACAACAGCTGAGAAAGTATTACAGGACTATGCCTGCATTTTGATGCCCAACACAGAACAGCAGTTCCGCCTTAACTGGGCCACATTTAACTCTGGTGATAAACGCTCAGACAATTTTCCCGACCTTTCTATTTTTGTTGGTGATTTAGCTGCAGATGTCACAGATAGCATGTTGCACGAAATTTTTGCTAGTAAATATCCATCTGTCAAAGCTGCAAAAGTCGTTGTTGATGCCACAACTGGCCGTCCAAAGGGTTATGGATTTGTAAGGTTTGGAGATGATAATGAGAGGTCACAAGCCATGACTGAAATGAATGGCGTTTATTGTTCAAGCAGGCCTATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGCTATCAACCGCAAGGGGGAGATGCATCAAATGGCAAGCCTGGCCTAGGATTTCAATCTGATTTGGATTCAAGCAACACGACGATATTTGTTGGTGGACTTGACCCTGATGTCACTGATGAAGATCTCTTGAAACCATTCTCCCAGTATGGTGAGATCATTTTTGTCAAGATTCCTGCAGGAAAACATTGCGGGTTTGTGCAGTTTGCACACAGAAATAGCGCTGAGGAGGCAAAGGAGAAATTAAATGGAACAGTCATTGGCAAGCAAACAGTGCGTCTGTCATGGGGCCGTACTCCGCCAAATAAGCAGGTTAGAGTTGATTTTGGCAACCCATGGAGTGGGGCATACTATGGAGGTCAGCTTTACAATGGCTATGGATATGCTTTAACACCTCCTCATGATCCAAGCTTATATGCCGCTGCAGCCTCCGCATATGCGGCTTATCCACTCTACGGCAGCCATCAACAGCAAGTAAGCTGA 1341 0.4787 MQTHASDSQPKQQQPAELNQRIPPTHTQTNIPRQPMPHPLPPPLPWMAMQYPAAAMMMQPQILSPQHYVLPPPPPPPQHYVSYPQYYPHLPHPPHQNQQQHQGSSGGENKTIWVGDLHHWMDENYLHSCFASTGEISSIKVIRNKQTGLSEGYGFVEFFSHTTAEKVLQDYACILMPNTEQQFRLNWATFNSGDKRSDNFPDLSIFVGDLAADVTDSMLHEIFASKYPSVKAAKVVVDATTGRPKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQPQGGDASNGKPGLGFQSDLDSSNTTIFVGGLDPDVTDEDLLKPFSQYGEIIFVKIPAGKHCGFVQFAHRNSAEEAKEKLNGTVIGKQTVRLSWGRTPPNKQVRVDFGNPWSGAYYGGQLYNGYGYALTPPHDPSLYAAAASAYAAYPLYGSHQQQVS* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01324 446 FunFam Polyadenylate-binding protein RBP47B 191 293 - -
Pte3g01324 446 FunFam Polyadenylate-binding protein RBP47 295 415 - -
Pte3g01324 446 SMART rrm1_1 314 381 IPR000504 GO:0003723
Pte3g01324 446 SMART rrm1_1 111 186 IPR000504 GO:0003723
Pte3g01324 446 SMART rrm1_1 204 278 IPR000504 GO:0003723
Pte3g01324 446 Gene3D - 109 184 IPR012677 -
Pte3g01324 446 Gene3D - 185 300 IPR012677 -
Pte3g01324 446 MobiDBLite consensus disorder prediction 1 41 - -
Pte3g01324 446 SUPERFAMILY RNA-binding domain, RBD 81 192 IPR035979 GO:0003676
Pte3g01324 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 282 IPR000504 GO:0003723
Pte3g01324 446 MobiDBLite consensus disorder prediction 280 301 - -
Pte3g01324 446 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 99 389 - -
Pte3g01324 446 MobiDBLite consensus disorder prediction 86 109 - -
Pte3g01324 446 MobiDBLite consensus disorder prediction 1 33 - -
Pte3g01324 446 FunFam Polyadenylate-binding protein RBP47B 109 189 - -
Pte3g01324 446 MobiDBLite consensus disorder prediction 92 109 - -
Pte3g01324 446 SUPERFAMILY RNA-binding domain, RBD 202 387 IPR035979 GO:0003676
Pte3g01324 446 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 378 IPR000504 GO:0003723
Pte3g01324 446 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 274 IPR000504 GO:0003723
Pte3g01324 446 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 171 IPR000504 GO:0003723
Pte3g01324 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 385 IPR000504 GO:0003723
Pte3g01324 446 Gene3D - 304 394 IPR012677 -
Pte3g01324 446 CDD RRM2_SECp43_like 202 281 - -
Pte3g01324 446 CDD RRM1_SECp43_like 111 191 - -
Pte3g01324 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 190 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01324 Pte-Chr3 11370734 11375112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01324 112 393 Eukaryotic Initiation Factors Gene Family AT4G34110 27.778 1.76e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01324 - - zju:107420914 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01324 3 11370734 11375112 Pte3g01324 3 11370734 11375112 RCT