Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01309 ATGGATAACCTTAACCAGTTAAAGTCGAAGGATCAAATGGAGGTTTCAGCACTGAAGATAATGCAGATGGACAAGCTCCAGTTCGATGTTTCTGGTTCTGCACGTGATTCTTCGAACTTTGTGGACAGCTCACCCCTGTCTTCTCCATCTTCATTCCCTCCAAACACACCATCCACTGTACCATTCAGTATTGATCATAATCCTATACCTCCACTTCAAGAACAAACCAGGCAGCCGCATATGCACTCTAATTCGAGCGCTAGAAACATGTGGGAAAACACTGGGGAAGTATCCGGCACAGATTATTTCGCTCTACCTATAGAGAAGCAAAACCGGATGGGTGCCATGAAAGAGATGATGTTCCGAATAGCAGCCATGAAGACAATTCATATAGATCCAGAGTCCGTGAAGCCACCCAAGAGGAGAAACGTCAAGACCTCCAAGGATCCTCAGAGCATAGCTGCACGGCATAGAAGAGAAAGGATAAGCGAGAGAATTAGGATTCTGCAGAGACTCGTACCGGGTGGGACTAGAATGGACACGGCATCCATGTTAGATGAGGCAATTCACTATGTCAAATTCTTGAAGACACAGGTCCAGTCATTGGAGAGGTACGCAGCTTACTGGCGAACCACTGGAATAGGGTTTCCATTGGCAATGTCTAGCGGTGGTAGAACTGGAAGTAGACCGTATCTTCCTCCGGCACAGACGTATCAAGGTCAGAATGTTCAGTTTCAGGATTACGCGGATGCTTAG 756 0.4669 MDNLNQLKSKDQMEVSALKIMQMDKLQFDVSGSARDSSNFVDSSPLSSPSSFPPNTPSTVPFSIDHNPIPPLQEQTRQPHMHSNSSARNMWENTGEVSGTDYFALPIEKQNRMGAMKEMMFRIAAMKTIHIDPESVKPPKRRNVKTSKDPQSIAARHRRERISERIRILQRLVPGGTRMDTASMLDEAIHYVKFLKTQVQSLERYAAYWRTTGIGFPLAMSSGGRTGSRPYLPPAQTYQGQNVQFQDYADA* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01309 251 Pfam Helix-loop-helix DNA-binding domain 153 195 IPR011598 GO:0046983
Pte3g01309 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Pte3g01309 251 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 42 229 IPR045843 GO:0003700|GO:0006355
Pte3g01309 251 FunFam BHLH transcription factor 149 212 - -
Pte3g01309 251 MobiDBLite consensus disorder prediction 134 155 - -
Pte3g01309 251 Gene3D - 144 212 IPR036638 GO:0046983
Pte3g01309 251 MobiDBLite consensus disorder prediction 31 86 - -
Pte3g01309 251 MobiDBLite consensus disorder prediction 31 49 - -
Pte3g01309 251 SMART finulus 152 201 IPR011598 GO:0046983
Pte3g01309 251 MobiDBLite consensus disorder prediction 57 86 - -
Pte3g01309 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 210 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01309 Pte-Chr3 11205591 11207305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01309 113 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 84.211 1.91e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte3g01309 HLH 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01309 - - qsa:O6P43_016056 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01309 3 11205591 11207305 Pte3g01309 3 11205591 11207305 RCT