Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01306 ATGGACATGGATGGTATGTACCGTAACGGTAAGCCTCCATCTTTAATGTCAGGCTTAGCTTCTGACTCTGAAGTGGTATCCACCTTGTTCAACAAACTTCTACACCACCCTCCATCTTCCTGCATGCCCCTGAAGACACATCAGCATCAACAGGACTTGTCAGCGTTACCGCTGGTTTTGCCACTACTGGAATTCTTATCTGCAGACGCTCCACCTGGCGGTTCAGATGTTGCAGCCTCTGGGTTTTCCTCTAGTTTCAATTTCTCCGATCCATTTGCTTATGTTTTAGGGGATGCCAAGGGAAACCCAAACCCGTCTTTTTCTTCTGGTTTTGAGGATTCTGATGTCAGCACTTCTGTTAGAGGATTTAGAATCTCGACTTCGTCGGATGATTGTCCTGCTGTTTTGGCGTGTATTATAGAGAAGGATAACGAAACGTCGGAGTTGCCTGCAAAGCCAATCGTGCGATCTTCATCCAAAAGGAGCAGAACTTCTGAAGTACACAATTTGACAGAAAAGAGAAGGAGGAGCATAATTAATGAGAAAATGAAGGCCTTGCAGAACCTAGTTCCTAATTCTGACAAGACGGACAAAGCCTCAATGCTGGATGAGGCTATTGAATATTTGAAGCAGCTCCAACTGCAAGTACAAGTGAGATTTCTCTTTTTCATTTATTTATTATATCAGACTTCAAGAAAACAAATTCCTCATAGACAATCTTATGTGTTTTACAATTGTTGA 741 0.4265 MDMDGMYRNGKPPSLMSGLASDSEVVSTLFNKLLHHPPSSCMPLKTHQHQQDLSALPLVLPLLEFLSADAPPGGSDVAASGFSSSFNFSDPFAYVLGDAKGNPNPSFSSGFEDSDVSTSVRGFRISTSSDDCPAVLACIIEKDNETSELPAKPIVRSSSKRSRTSEVHNLTEKRRRSIINEKMKALQNLVPNSDKTDKASMLDEAIEYLKQLQLQVQVRFLFFIYLLYQTSRKQIPHRQSYVFYNC* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01306 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Pte3g01306 246 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 21 218 IPR031066 -
Pte3g01306 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 219 IPR036638 GO:0046983
Pte3g01306 246 CDD bHLH_AtPIF_like 166 218 IPR047265 -
Pte3g01306 246 SMART finulus 169 218 IPR011598 GO:0046983
Pte3g01306 246 Pfam Helix-loop-helix DNA-binding domain 167 213 IPR011598 GO:0046983
Pte3g01306 246 Gene3D - 158 219 IPR036638 GO:0046983
Pte3g01306 246 FunFam Basic helix-loop-helix transcription factor 158 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01306 Pte-Chr3 11194254 11195548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01306 112 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 48.182 8.48e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte3g01306 HLH 3.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01306 - - qsa:O6P43_016048 162.54