Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01286 ATGGCTCTAGAAGCACTCAAGTCTACATCTTCAGCCACCCCATCATTCACCGACCTACACCCCATGGAATCGTGGACTAAAGGGAAGCGTTCCAAGCGTTCACGTATGGAGCACCCAACATGTACAGAGGAGGAGTACTTAGCTCTCTGTTTGGTTATGCTTGCTCGAGGTGGCGCGGGTGTATCCACCGCTCACTTGTCCGATATGAACCTCAGATGCAGCTCTGAAACTCCTAGTCCTGTCCCAGTTCCTCGGCCTGATCATCAGTCGGCGGCGAATCCAATCAAACTCGCTTACAAGTGCTCTGTTTGCAACAAAGCCTTCTCATCGTTTCAGGCTCTTGGTGGTCACAAATCCAGCCATAGAAAGCTATCCAGTGTGGGTGGTGAGAACCAGTCAACATCCTCTGACGTTGCCACTACCTCTGCAAACACAACAGTAACCACATCGAACGGTAGAAGAAAGACCCATGAATGCACTATCTGCCATAAGTCGTTTTCTACCGGTCAAGCCTTGGGAGGACACAAACGTTGTCACTATGACGGTGGTAGCAGCAGTGGCGGTGCCGGTAGCAGCACCTTGACCGCCTCAGAAGGTGTCGGATCTACACACACCTTGAGTCACAGTCAGCAGCGAATGTTCGATCTAAACCTGCCAGCCTTGCCAGAATTGTCACCCAAGTTACCAATCTCCTGCGACCAAGAGGTAGAGAGCCCTCTGCCTATGAAGAAGGCTCGTCTGCTGTTGGCACAAGACCGCTGA 762 0.5184 MALEALKSTSSATPSFTDLHPMESWTKGKRSKRSRMEHPTCTEEEYLALCLVMLARGGAGVSTAHLSDMNLRCSSETPSPVPVPRPDHQSAANPIKLAYKCSVCNKAFSSFQALGGHKSSHRKLSSVGGENQSTSSDVATTSANTTVTTSNGRRKTHECTICHKSFSTGQALGGHKRCHYDGGSSSGGAGSSTLTASEGVGSTHTLSHSQQRMFDLNLPALPELSPKLPISCDQEVESPLPMKKARLLLAQDR* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01286 253 MobiDBLite consensus disorder prediction 23 38 - -
Pte3g01286 253 MobiDBLite consensus disorder prediction 1 20 - -
Pte3g01286 253 Gene3D Classic Zinc Finger 96 179 - -
Pte3g01286 253 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 26 222 IPR044653 GO:0003700
Pte3g01286 253 MobiDBLite consensus disorder prediction 182 208 - -
Pte3g01286 253 MobiDBLite consensus disorder prediction 185 208 - -
Pte3g01286 253 SMART c2h2final6 99 121 IPR013087 -
Pte3g01286 253 SMART c2h2final6 157 179 IPR013087 -
Pte3g01286 253 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Pte3g01286 253 ProSitePatterns Zinc finger C2H2 type domain signature. 159 179 IPR013087 -
Pte3g01286 253 MobiDBLite consensus disorder prediction 1 38 - -
Pte3g01286 253 SUPERFAMILY beta-beta-alpha zinc fingers 99 179 IPR036236 -
Pte3g01286 253 Pfam C2H2-type zinc finger 98 123 - -
Pte3g01286 253 Pfam C2H2-type zinc finger 157 181 - -
Pte3g01286 253 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Pte3g01286 253 MobiDBLite consensus disorder prediction 125 150 - -
Pte3g01286 253 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 179 IPR013087 -
Pte3g01286 253 MobiDBLite consensus disorder prediction 119 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01286 Pte-Chr3 11009908 11011713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01286 1 247 C2H2 Transcription Factor Family AT1G27730 47.876 3.08e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte3g01286 zf-C2H2_6 5.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01286 - - qsa:O6P43_015998 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01286 3 11009908 11011713 Pte3g01286 3 11009908 11011713 RCT