Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01285 ATGGAGCGCAAATTCAGTGAGCTGGTCGTCAACGATGACTCTTGTTCTGCTTTTAGTGATTGCAACAGTGATAGATCCGGCGAATTCCCTACGGCTTCATCTGAAAGTCGGCGGCTATGGATTGCTTGCGCTTCAGAGAACTCCGACGACTTCATTCATCATCTGGTCTCTGGCCTGGAGTCCTGTTCATTGGACGAGCAAAAGCAAGCTGCCATGGAGATCAGATTACTTGCCAAGGACAAACCAGATAATCGCTTGAAAATTGCCAAAGCGGGCGCAATCAAACCGTTAATCTCACTCATATCGTCGCCTGATCTCCAGCTCCAAGAGTACGGTGTCACAGCGATTCTGAATCTGTCACTCTGTGACGAGAACAAAGAACTCATAGCTTCATCAGGAGCCATTCGACCTCTTGTAAGAGCTCTCAAGACGGGCACTTCCACTGCCAAAGAGAACGCAGCCTGCGCTCTGCTTCGTCTTTCGCAGCTAGAGGAGAATAAGGTCCCAATCGGAAGGTCAGGAGCCATCCCACTCCTTGTTAGCCTTCTGGAGAACGGTGGATTTCGCGGGAAGAAAGATGCATCCACGGCACTTTATTCTCTGTGTTCGGTAAAGGAGAATAAGATCAGGGCCGTCCAATCGGGAATCATGAAGCCATTAGTTGAATGGATGGCTGACTTTGGTTCAAACATGGTGGACAAGTCAGCATATGTGTGCAGCGTGCTGGTAACGTTGCCGGAGGCAAGGGCGTCATTGGTTGAGGAAGGTGGCGTACCCGTACTAGTGGAAATAATAGAGGTGGGGACACAGAGACAGAAAGAGATAGCAGTAGCGATATTATTGCAAGTTTGTGAGGACAGTGCGTTGTACCGTACAATGGTGGCCCGGGAAGGAGCGATTCCTCCTTTGGTGGCTTTATCAGAATCTGGGAGTTGCAGCCATCGCGCCAAGCAAAAGGCGGAGACTCTCATAGAGCTTTTGCGGCAACCGAGATCCGGCAACACCGCTAAAAGGGACACATGA 1023 0.5024 MERKFSELVVNDDSCSAFSDCNSDRSGEFPTASSESRRLWIACASENSDDFIHHLVSGLESCSLDEQKQAAMEIRLLAKDKPDNRLKIAKAGAIKPLISLISSPDLQLQEYGVTAILNLSLCDENKELIASSGAIRPLVRALKTGTSTAKENAACALLRLSQLEENKVPIGRSGAIPLLVSLLENGGFRGKKDASTALYSLCSVKENKIRAVQSGIMKPLVEWMADFGSNMVDKSAYVCSVLVTLPEARASLVEEGGVPVLVEIIEVGTQRQKEIAVAILLQVCEDSALYRTMVAREGAIPPLVALSESGSCSHRAKQKAETLIELLRQPRSGNTAKRDT* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01285 340 FunFam RING-type E3 ubiquitin transferase 41 333 - -
Pte3g01285 340 Pfam Armadillo/beta-catenin-like repeat 82 120 IPR000225 GO:0005515
Pte3g01285 340 Pfam Armadillo/beta-catenin-like repeat 123 161 IPR000225 GO:0005515
Pte3g01285 340 Pfam Armadillo/beta-catenin-like repeat 165 203 IPR000225 GO:0005515
Pte3g01285 340 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 134 IPR000225 GO:0005515
Pte3g01285 340 PANTHER U BOX DOMAIN-CONTAINING 51 328 - -
Pte3g01285 340 SMART arm_5 245 285 IPR000225 GO:0005515
Pte3g01285 340 SMART arm_5 287 329 IPR000225 GO:0005515
Pte3g01285 340 SMART arm_5 163 203 IPR000225 GO:0005515
Pte3g01285 340 SMART arm_5 81 121 IPR000225 GO:0005515
Pte3g01285 340 SMART arm_5 122 162 IPR000225 GO:0005515
Pte3g01285 340 Gene3D - 32 338 IPR011989 -
Pte3g01285 340 SUPERFAMILY ARM repeat 49 314 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01285 Pte-Chr3 10996881 10998924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01285 52 337 U-box Gene Family AT2G23140 50.350 1.42e-84 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01285 - - zju:107433738 530.791