Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01284 ATGGATTCATCTTCAGTCTGGAAACCCATGCCAGACTTGGTTGCTGAGTGTTGCCCAGATGCAATCACCAAATACGTTACAGAGAGAAAGTCTTGTTTGATTTCAAATGTAAGGAATCATCTCTGTTACATAGGCTGGAAAATCGAGCTCATGAAAGACAGACACATTACCAGGTTCCGCTATACCTCACCGGATGGCAACATTTACTATTCCCTTCTACAACTGTGTCAAGAACTTCTAAGCTCCCCACTACCACTATCCTCATTTCCACTACCTCCCTCTCAATCTGACGATGAAACTTCATTCTGGACTCCCGTGACAGATTTGGTTGCTGAGTATTGTCCTGATGCAGTCGCCAAATACGTGACAAGAGGGACGCATTCTCTGGTTTCCAAAGTAAGGAATCATCTCTATCAGATGGGTTGGGAAATTGAGTTCATGCAGGACAAACACATCAGCAGATTTCGCTACACCTCTCCAGACGGTAACATTTACTATTCTCTCCGAAAACTGTGTCAAGAACTTCAAGGCTCCCAATCTCTATCACTACCAACTACAACTCCGCCTTCACTCTCTCCCTCTGAACGTGATGACGAGCCTCCGGTCTGGAATTCCATGCCAGACTTGCGTGCTGAGTGTTGCCCAGATGCTGTTACGAAATACGCAAGGGAAGGAACTTTTTCCCTGATTTCCAATGTGAGAGGTCATCTACATTACATGGGCTGGGCCATTGAGTTCATGGAAGGCAGACAAATAAAGAGATTTCGCTATACCTCACCAGATGGTAAGATTTACTTTTCTCTTCGACAAATCTGTAAAGAACTTCTAATCACCCCCTCACCAACACAACCGCCACCTTCATCACTATCTCCCTCTCAATCCAATGATGAACCTTCCCATTCGACATTGTCATCGCTCTCTGAAAAAGCACTAGAACCAATGATGAAGAACAGGCCTAAAGTTTGCACTTCTCAGAATGTAACACCTTTAACTCCTCTCAGTTCCGCGACCCAATCTGATGTTGCTACTTTTGAACCTGAATATTGCCCTCAAGCTGTTATTGACTGGCACAGTTGCCCTTTGGAGCACAAGCTAGGCAAGAAATCCACGGTATCATCTCTGTGTCTCAAAGCGAAGAGGCATCTTTCCGCCATTGGATGGGTATTTTGGTATGCTCACAAAGCAGGGAAGCGGGAATTGCGTTACGAATCACCAAATGGTAAGTGCTACGCATCTCTCAATACTGCCTGTAAAAGCTGCATAGAAGATGGGTCTCTATATGAAAGCCTTGCCTCCCCCTCGAAGACTAATCATGTCGCTGGAGGAAGTCCATGTAGTGCAACATCATTGTCTACAATGGTTACTACTACTCCAGACAGGGGAACTGCCAGTCGACTGATTGGAACTAAAAGAAGAATTGATTTTGTACCGTTTGATGGTTCTCCATTCCATCTTGAACCCAACAAAAGGACTGTTCCCGTTGGTAAACTGGCTCAAGAAACGCTAAGCAACCCAGAGCATGAAAAGGCCAGAAGTCCCGATGTTAGCACATGCAAGGTAATTCCGGATACGAAGAGGCTAAAATGCCGCACTAGTTGTAGCAATCTAATACACTGGTCAGGAAAAATTGTTAGGCGGGAGAGAAAAGAATCTGGCCCTTTAAAGCATAGACCTCGAACAATTTTGTCTACGTTGATCGAGAACAACATAGTGGAACCAAACACAAAGGTGCAATACGGTGAAAGAGGAAAGAGAGGTAGCCTATCTAGTGATGGCATCCATTGCGATTGTTGCTTCAAGATCTTTACTATCAGTGGTTTTGAAGCGCATTCTGGTAGCGCAAAACACAGGCCTTCTGCCAATATATTCTTAGAAGATGGCAGGTCACTTTTGGATTGCCAATTGCAAGCATTGGCTTGTAATAACAAAAGAAGAAGTTCTGGGACTCTTGCTATAACAAATGGAAGTTTGCTGCAAGATGTTAATGATGATATTTGCTCTATTTGTCATTATGGGGGTGAGCTATTGCTTTGTGATCTCTGTCCTTCCTCATTCCACAGAACCTGTCTTGGTCTGAATGATCTTCCTGAAGGGGATTGGTTTTGCCCATCCTGTCGTTGCGAAATATGTCAGCAAGGTGGATTCAACAGAGATTATACAGGTGACATTAATATTAAAGACGATTGTAAGTTTCTTAATTGTGATCAATGTGAGTGCAATTTTCACTTTTGGTGTCTGAAGAGTGAAGGGCATCATGCCCTGGAAGGTTATGGTTGTGATCCTAACAAGAATTGGTTCTGCAGCGTTAAGTGTGAGAAAATCTTTCAGGGCCTTCACAGTATCATTGGCAAAACAATTCCGTTAAGAGACAATTTGACGATGACTTTGTTGAAAATCCCGGAATCTGACAAGCCTCAAAGCTACGGTTCTGAGTCTCCTGACCTTGAAATGGCGATTCAGAATTTTAGCAAGCTCCACCTGGCTCTTGATGTAATGCACGAGTGCTTCGAGCCAGTCTTAGAGCCGGACACTGGGAAAGATCTCGTTGAGAAGGTTGTTTTCAGTAAAAGATCCAAACTTCGTCGGCTGAACTTCAGTGGATTCTACACAGCTGTGCTGCAAAATAATGATGAATTGATAACTGTGGCGAACGTAAGGGTTTACGGAAAGAAGGTTGCAGAGGTCCCTCTTATAGGGACAAGATTCCAATTTCGTCGTCTCGGCATGTGCCGCATATTGATGAATGGACTTGAAAAATTGCTTGCAAATCTGGGTGTAGAGAGAATCATTTTGCCTGCGGTGCCTGGTGTGGTGCAAACTTGGACGTCCTCCTTTGGATTTACTATCATGACAGATTCTGAGAGAGTACATTTCCTTAACTTCACCTTTTTGGTTTTCCAGGATACCATTTTGTGTCAGAAACTCTTGTCACCCCAGACGGTTAGCGTCACAAGCTACTGA 2961 0.4397 MDSSSVWKPMPDLVAECCPDAITKYVTERKSCLISNVRNHLCYIGWKIELMKDRHITRFRYTSPDGNIYYSLLQLCQELLSSPLPLSSFPLPPSQSDDETSFWTPVTDLVAEYCPDAVAKYVTRGTHSLVSKVRNHLYQMGWEIEFMQDKHISRFRYTSPDGNIYYSLRKLCQELQGSQSLSLPTTTPPSLSPSERDDEPPVWNSMPDLRAECCPDAVTKYAREGTFSLISNVRGHLHYMGWAIEFMEGRQIKRFRYTSPDGKIYFSLRQICKELLITPSPTQPPPSSLSPSQSNDEPSHSTLSSLSEKALEPMMKNRPKVCTSQNVTPLTPLSSATQSDVATFEPEYCPQAVIDWHSCPLEHKLGKKSTVSSLCLKAKRHLSAIGWVFWYAHKAGKRELRYESPNGKCYASLNTACKSCIEDGSLYESLASPSKTNHVAGGSPCSATSLSTMVTTTPDRGTASRLIGTKRRIDFVPFDGSPFHLEPNKRTVPVGKLAQETLSNPEHEKARSPDVSTCKVIPDTKRLKCRTSCSNLIHWSGKIVRRERKESGPLKHRPRTILSTLIENNIVEPNTKVQYGERGKRGSLSSDGIHCDCCFKIFTISGFEAHSGSAKHRPSANIFLEDGRSLLDCQLQALACNNKRRSSGTLAITNGSLLQDVNDDICSICHYGGELLLCDLCPSSFHRTCLGLNDLPEGDWFCPSCRCEICQQGGFNRDYTGDINIKDDCKFLNCDQCECNFHFWCLKSEGHHALEGYGCDPNKNWFCSVKCEKIFQGLHSIIGKTIPLRDNLTMTLLKIPESDKPQSYGSESPDLEMAIQNFSKLHLALDVMHECFEPVLEPDTGKDLVEKVVFSKRSKLRRLNFSGFYTAVLQNNDELITVANVRVYGKKVAEVPLIGTRFQFRRLGMCRILMNGLEKLLANLGVERIILPAVPGVVQTWTSSFGFTIMTDSERVHFLNFTFLVFQDTILCQKLLSPQTVSVTSY* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01284 986 MobiDBLite consensus disorder prediction 289 307 - -
Pte3g01284 986 Pfam PHD-finger 665 707 IPR019787 -
Pte3g01284 986 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 656 726 IPR013083 -
Pte3g01284 986 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 860 951 IPR016181 -
Pte3g01284 986 SUPERFAMILY FYVE/PHD zinc finger 656 707 IPR011011 -
Pte3g01284 986 SMART PHD_3 707 772 IPR001965 -
Pte3g01284 986 SMART PHD_3 665 706 IPR001965 -
Pte3g01284 986 MobiDBLite consensus disorder prediction 179 193 - -
Pte3g01284 986 ProSiteProfiles Zinc finger PHD-type profile. 663 708 IPR019787 -
Pte3g01284 986 Pfam Tify domain binding domain 586 636 IPR032308 -
Pte3g01284 986 PANTHER PHD FINGER PROTEIN 12 350 979 IPR042163 GO:0003714|GO:0045892
Pte3g01284 986 MobiDBLite consensus disorder prediction 277 307 - -
Pte3g01284 986 MobiDBLite consensus disorder prediction 179 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01284 Pte-Chr3 10980876 10986726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01284 368 924 PHD Transcription Factor Family AT5G58610 36.589 2.87e-106 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte3g01284 TDBD 9.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01284 - - csin:114320619 622.083