Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01274 ATGCCACCAGTGGAGGAGGAGACTTTGACTGTGCAAGAATATTGCTCTTTGCCTTCTCTCCGTCACAATTGCGATTTCTTTCTTCACGGAGCTTTTCGTTTTCTGGGTATTGTCAGAATGCCTATGTATCAGCCATCTGCTGGGAGAAGAGATGGGGATGTGAAGCTTGGTGTGAGCGGTGGTGGGCAAGTTCTCGATCTGGAAACCGCAGTCAAAGATGGGGTTTTTGATGGCGGAGAGGGATTGAACTGTGTTGGTGGCTTTTCAGGGAAACTGGATCTGAAGATGATGATCGAGGAGCTAGAAGCTATAGACGTGCCCTCTGTGTTTATTTGTCCTATCTCGCTGGAGCCAATGCGAGACCCTGTGACTCTTTGTACGGGTCAAACGTATGATAGATCCAACATCCTCAAATGGTTTGCTCTTGGTCACTGCACTTGTCCAACCACAATGCAAGAACTTTGGGACGATACCGTCACACCCAATAAGACTCTGAGTCAGCTCATACATAGTTGGTTCTCTCAAAAGTACTTGTCCATGAAGAAGAAGTCCGAGGATATCCAAGGAAGAGTATTGGAACTCATGGAGACGCTTAAGAAGGTAAAAGGTCAAGCTAGAATTCTTGCTCTCAAAGAGATGAGGCAGTTTTTAGCTGCACATTCTTCTACCAAGCAGACAATAGCTGACAACGGTGGGCTCTCTCTGATTTCCTCCTTGTTAGGTCCGTTCACTTCGCACGCAGTTGGATCGGAAGCAATTGGGATTTTAGTCAATTTGGATGCAAATTTAGAGACGAGGACCGGTCTTATGCAACCAGCAAAGATATCTGTGGTAGTGGATATTATGAATGAGGGGACGATTGAGACAAAAATCAATTGTGCCAAACTGATTCATATTTTGATTGAAGGGAATGATTCAACAACTGACGCTGTATCCAGCTTGAGTTTGCTTGTTGGATTGTTAAGATTAGTGAAGGATAAGAGATATCCCAGTGGGATATTCACTGGACTTGCGTTGCTAAAAACTATATGTTTTCAGTCTCATGAGTCTGTTAGGAGCTCAATAGTGAGTATTGGAGCGGTTCCACATTTAATTGGGCTATTACCGGGCTTGAATGATGATTGCTTGGAGTTAGCCCTTGGTGTTCTTGACAACCTGTCAACTCTTCCGGAGGGAATGCAGGCCATGAAAGATTGTCCAAACATTATACCGATTCTGGTGAAGATATTGATGAAGGTTTCAGAAAGCTGCACGGAGTTTGCTTTGTCTATCTTGTTGGCAGTTTGTAAACTTGCTCCTGACGAATGTGCTTCAGAAGCTGTGGAGGCTGGTTTGGCAGCAAAGCTACTGCTCGTAATTCAGAGTGGCTGCAATCCTTTGTTAAAGCAAAGGTCAGCTGAGCTCTTAAAATTATGTAGTTTAAATTATTCCGCTTCCCTTTTCATTTCCAAATGTAAGCTTACAACAACTATGCAATGA 1479 0.4388 MPPVEEETLTVQEYCSLPSLRHNCDFFLHGAFRFLGIVRMPMYQPSAGRRDGDVKLGVSGGGQVLDLETAVKDGVFDGGEGLNCVGGFSGKLDLKMMIEELEAIDVPSVFICPISLEPMRDPVTLCTGQTYDRSNILKWFALGHCTCPTTMQELWDDTVTPNKTLSQLIHSWFSQKYLSMKKKSEDIQGRVLELMETLKKVKGQARILALKEMRQFLAAHSSTKQTIADNGGLSLISSLLGPFTSHAVGSEAIGILVNLDANLETRTGLMQPAKISVVVDIMNEGTIETKINCAKLIHILIEGNDSTTDAVSSLSLLVGLLRLVKDKRYPSGIFTGLALLKTICFQSHESVRSSIVSIGAVPHLIGLLPGLNDDCLELALGVLDNLSTLPEGMQAMKDCPNIIPILVKILMKVSESCTEFALSILLAVCKLAPDECASEAVEAGLAAKLLLVIQSGCNPLLKQRSAELLKLCSLNYSASLFISKCKLTTTMQ* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01274 492 PANTHER WDSAM1 PROTEIN 100 478 IPR045185 GO:0061630
Pte3g01274 492 Gene3D - 190 474 IPR011989 -
Pte3g01274 492 ProSiteProfiles U-box domain profile. 105 179 IPR003613 GO:0004842|GO:0016567
Pte3g01274 492 CDD RING-Ubox_PUB 107 159 IPR045210 -
Pte3g01274 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 189 IPR013083 -
Pte3g01274 492 Pfam U-box domain 106 176 IPR003613 GO:0004842|GO:0016567
Pte3g01274 492 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 359 396 IPR000225 GO:0005515
Pte3g01274 492 SUPERFAMILY ARM repeat 193 475 IPR016024 -
Pte3g01274 492 SMART Ubox_2 109 172 IPR003613 GO:0004842|GO:0016567
Pte3g01274 492 SUPERFAMILY RING/U-box 100 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01274 Pte-Chr3 10899444 10901529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01274 40 493 U-box Gene Family AT5G65920 62.227 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01274 - - qsa:O6P43_015965 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01274 3 10899444 10901529 Pte3g01274 3 10899444 10901529 RCT