Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01271 ATGAGAACGGGTTGTAAAATGGCTTCCAAGCGTTGTGACTCGTGCAAATCCGCCACAGCCACTCTCTTCTGCAGAGCCGACAGTGCTTTCCTTTGCGTTGGTTGCGACTCCAAAATTCATGCTGCCAATAAACTTGCTTCTCGTCACGCCCGTGTCTGGGTTTGCGAGGTCTGCGAGCAAGCTCCTGCTCATGTCACTTGCAAGGCTGACGCCGCGGCTCTCTGCGTTACATGCGACCGTGACATCCACTCTGCAAACCCTCTCGCCTGCCGTCACGAGCGTGTCCCCGTGACCCCATTCTTCGACCCTGTCCATTCGTTCCAGACGAAGCCCACTGGAGCTGTTCTGAACTTCCTAGACGAGGGTTATATTAACGACGTTGACCGTGACGCTGATGTTAGCAGCGAGGAAGCTGAAGCAGCCTCGTGGTTACTTTCTGAACCCAAAGCCGTCGAGAGCCCTGATCTAAGCTCTGGTCAGTACGTGTTCTGTGAAATGGACCCCTATCTGGATCTGGAATACGGACCCCTCGATCCAAAAGTTGAAGCTCAGGAGCAAAACAGCTCCGGTACAGACGGTGTGGTTCCCGTACAGCACAAGAACCCTATGTTTCCATCCTCAATGATCGATCACTACTTTGACATGGACTTCACATGCTCCAAGCCCTTCTCATTTGGCTACAACGCTCACTGCCTCAGTCACAGTCTTTCATCGTCGTCTTTGGACATTGGGGTAGTGCCAGATGGGAACACGATGTCAGATAGATCGATCTGTTATGAGAAACCGATTGGTACGGTGGCGGAGACAGCGAATCATGCGGTGCAGATGTCAGCAGCGGATAGAGAGGCGCGGGTTTTGAGATACCGGGAGAAGAGAAAGAATCGAAAATTTGAGAAGACGATTAGGTATGCATCGCGAAAGGCTTATGCGGAAACGAGGCCACGAATCAAAGGAAGGTTCGCTAAACGATCCGACATAGATGTCGAACTGGATCGTTTTGGTGGGTATGGGGTTGTGCCGAACTTTTGA 1029 0.519 MRTGCKMASKRCDSCKSATATLFCRADSAFLCVGCDSKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLACRHERVPVTPFFDPVHSFQTKPTGAVLNFLDEGYINDVDRDADVSSEEAEAASWLLSEPKAVESPDLSSGQYVFCEMDPYLDLEYGPLDPKVEAQEQNSSGTDGVVPVQHKNPMFPSSMIDHYFDMDFTCSKPFSFGYNAHCLSHSLSSSSLDIGVVPDGNTMSDRSICYEKPIGTVAETANHAVQMSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDIDVELDRFGGYGVVPNF* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01271 342 ProSiteProfiles Zinc finger B-box type profile. 7 54 IPR000315 GO:0008270
Pte3g01271 342 ProSiteProfiles CCT domain profile. 281 323 IPR010402 GO:0005515
Pte3g01271 342 SMART bboxneu5 7 54 IPR000315 GO:0008270
Pte3g01271 342 SMART bboxneu5 55 97 IPR000315 GO:0008270
Pte3g01271 342 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 12 326 IPR045281 GO:0009909
Pte3g01271 342 CDD Bbox1_BBX-like 12 54 - -
Pte3g01271 342 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Pte3g01271 342 Pfam CCT motif 281 323 IPR010402 GO:0005515
Pte3g01271 342 CDD Bbox1_BBX-like 54 97 - -
Pte3g01271 342 Pfam B-box zinc finger 52 97 IPR000315 GO:0008270
Pte3g01271 342 Pfam B-box zinc finger 10 49 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01271 Pte-Chr3 10872942 10874978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01271 7 343 C2C2-CO-like Transcription Factor Family AT5G24930 60.548 2.27e-134 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pte3g01271 zf-B_box 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01271 - - tcc:18587662 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01271 3 10872942 10874978 Pte3g01271 3 10872942 10874978 RCT