Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01267 ATGGAATCTGAAGAAGGTTTGGTCAAACGAGAGTTGGAGGAATTGCAGAAACAGTTGAGCAAGAAGCAAATGTTCGAGCAAGCCGTCTCTTCCCTCAAGTTCTTGATTCAGCAAGGATACCCTTCTGCTTCACCAGCTCTCCGCAAATCGTTTTATTCAGTTATATGCCGAGTTGCTACCTTGTTAAAGACACGATATACAGCACCAGGTTTCTGGCATGCCGGGTTGGGGCTGTTTGAGCAGGCTGAATTGCTCGTATCTGATAATACCGAGAAAAACCACTTGAGGGGTTGCATTGCTCAGGCAAAAGAACAATTGCATATAGAAGACAATCCATCACAGAGATCACAGCCTTTGCAAAGTTCCAGGAACAGAGGATATCTGTTTGAGGGGCACCTTACTGTTGATCAAGAGCCACCGCAGCCTCAGTGGCTTGTACATTCAAACCTCTTGACTACAGCTGCTATGCATTTGTCAGCTGAATCTTCCCAAGGTCCAGCTGACAGTGATACCATCCCAGAAAACGCTGGACATCTGCTTCAGGAGATTATAGATAGACTAGATGATGTGGTACCCATGATCATGGATAATGGTCCTACGGCTCCAAGAGTTCCTCCTGCTAGTAAAGAAGTTGTAGCCAAGCTGCCAGTCGTCACACTTACAGAAGAAATCCTAGATAAGCTAGGAAAAGATGCAGAGTGTGCAATTTGCAGGGAAAACTTAGTTGTAAATGACAAGATGCAAGAATTGCCGTGCAAGCACACATTTCACCCTCCCTGTCTTAAACCTTGGCTGGATGAGCACAATTCATGCCCAATTTGTCGGCATGAGTTACAGACTGACGATCATGCATACGAAAGCTGGAAAGAACGACAGAAGGAGGAAGAAGAGGAGAGGAAAGGTGCAGAAAATGCCGTTCGTGGCGGGGAATATATGTATGTTTGA 945 0.4561 MESEEGLVKRELEELQKQLSKKQMFEQAVSSLKFLIQQGYPSASPALRKSFYSVICRVATLLKTRYTAPGFWHAGLGLFEQAELLVSDNTEKNHLRGCIAQAKEQLHIEDNPSQRSQPLQSSRNRGYLFEGHLTVDQEPPQPQWLVHSNLLTTAAMHLSAESSQGPADSDTIPENAGHLLQEIIDRLDDVVPMIMDNGPTAPRVPPASKEVVAKLPVVTLTEEILDKLGKDAECAICRENLVVNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKERQKEEEEERKGAENAVRGGEYMYV* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01267 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 282 IPR013083 -
Pte3g01267 314 FunFam E3 ubiquitin-protein ligase RNF181 195 281 - -
Pte3g01267 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 113 278 - -
Pte3g01267 314 CDD RING-H2_RNF126-like 233 275 - -
Pte3g01267 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Pte3g01267 314 SMART ring_2 234 274 IPR001841 -
Pte3g01267 314 Pfam Ring finger domain 233 275 IPR001841 -
Pte3g01267 314 Coils Coil 285 305 - -
Pte3g01267 314 SUPERFAMILY RING/U-box 228 281 - -
Pte3g01267 314 MobiDBLite consensus disorder prediction 292 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01267 Pte-Chr3 10845434 10847398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01267 8 315 C3H Transcription Factor Family AT5G20910 66.558 4.98e-137 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01267 K16274 - qsa:O6P43_015814 484.952