Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01254 ATGAATGGGTTTTCAATGTTTCTTGGTCAATTACGACTATCTCATGGATGGCTCTTGCGATTTAGTTTGCAGGTCATGCTTCTTGGTTTTGTGCTTCTGGGGCGTTCTTTGGAAGAGAAAGCAAGGATCAATGCATCAAGTGATATGAATGAATTGTTGTCACTGATATCTACTCAGTCGCGGCTTGTAATTAGCTCATCAGAGGATTCTTCACCTAATGATGTTGTGATTTCCGCTGATGCAATATGCCTTGAAGTTCCAACTGATGATATTCGAGCTGGTGATGCTGTTTTGGTCTTGCCTGGAGAAACAATTCCTATAGATGGGAAGGTCATTGCTGGAAGAAGCATTGTTGATGAATCCATGCTCACAGGAGAGTCACTTCCTATATTTAAAGAGAAAGGTTCAACAGTGTCTGCTGGAACTATAAATTGGGATGGCCCTTTAAGGATAGAAGCTTCTTCTACTGGCTCCAACTCGATGATATCTAAAATTGTCAATATGGTTGAGGATGCTCAATCTCAAGAAGCACCAATACAGAGGCTTGCTGATTCAATAGCTGGGCCATTTGTATATACTGTAATGACTCTTTCAGCTGCAACGTTTGCATTTTGGTATTACATTGGCTCACAAGTCTTTCCAGATGTTTTACTTAATGATATTGCTGGTCCAGAAGGAGACCCTTTGCTCTTGAGCTTGAAACTTGCTGTAGATGTCCTGGTAGTCTCGTGTCCTTGTGCTTTGGGCCTTGCAACACCCACTGCAATACTAGTTGGCACTTCAATTGGAGCAAAACAAGGACTGGTTATACGAGGGGGAGATGTGCTAGAACGCTTATCTGGCATAGATTATGTAGCTTTGGACAAGACTGGAACTCTAACTGAAGGAAAGCCCACTGTGTCATCCATAACCTCTTCTCTATATGAGGAGTCAGAAGTTGTACGCATTGCTGCTGCAGTGGAGAAAACAGCATCGCATCCTATAGCAAAGGCTATTATAGATAAAGCTGAGTCCTTAAATTTGACCATCCCAGTTACAAGAGGCCAATTAGTTGAACCTGGGCATGGAACCTTGGCTGAAGTAGATGGGCATTTGGTAGCAGTTGGTGACCTAGAATGGGTTAATGAGCGTTTTGAGAGAAGAATCAGTCCAACTCATTTGATGACTCTACAAAATGCTTTAACAGACAAATTATCTAATGCCGCATTTTCAGACTATTCAAAATCTGTAGTTTATGTTGGACGTGAAGGGGAAGGCATAATTGGAGCTATCTCTGTATCTGATAGACTGCGTGGTGATGCTGAATATTCTGTTGCTAGACTCCAGCAGAAGGGTATCAAAACAGTCCTGTTATCAGGGGATAGGGAAGAGGCAGTTGCAACTGTGGCAGAGTTTGTTGGGATTCAAAAGGACTTTGTCAAAGCTTCTTTGTCACCACAGCAGAAATCGGGAGTCATCTTAGATCTGAAAGCTGCTGGCCACCATATTGCTATGGTTGGTGATGGTATAAACGATGCACCTTCATTGGCACTGGCTGATGTTGGGATTGCTCTACAGACTGAATTGCAAGATAATGCCGCGTCAGATGCAGCATCCATTGTACTTGTTGGGAACAAACTCTCACAGGTTGTAGATGCTCTTGATCTTGCACAAGCAACAATGGCGAAGGTGTACCAGAATTTATTGTGGGCTGTAGCTTATAATGCCGTGGCTATACCCATCGCTGCTGGAGTATTGCTTCCCCGGTTTGAATTTGCTATGACACCTTCACTTTCAGGAGGACTGATGGCTTTGAGCTCCATATTCGTTGTTACAAATTCATTACTTTTACGACTTCACCAAGGAACTGAGAGATCTTACTCGGACCTGAGACAAAGGTGA 1881 0.4301 MNGFSMFLGQLRLSHGWLLRFSLQVMLLGFVLLGRSLEEKARINASSDMNELLSLISTQSRLVISSSEDSSPNDVVISADAICLEVPTDDIRAGDAVLVLPGETIPIDGKVIAGRSIVDESMLTGESLPIFKEKGSTVSAGTINWDGPLRIEASSTGSNSMISKIVNMVEDAQSQEAPIQRLADSIAGPFVYTVMTLSAATFAFWYYIGSQVFPDVLLNDIAGPEGDPLLLSLKLAVDVLVVSCPCALGLATPTAILVGTSIGAKQGLVIRGGDVLERLSGIDYVALDKTGTLTEGKPTVSSITSSLYEESEVVRIAAAVEKTASHPIAKAIIDKAESLNLTIPVTRGQLVEPGHGTLAEVDGHLVAVGDLEWVNERFERRISPTHLMTLQNALTDKLSNAAFSDYSKSVVYVGREGEGIIGAISVSDRLRGDAEYSVARLQQKGIKTVLLSGDREEAVATVAEFVGIQKDFVKASLSPQQKSGVILDLKAAGHHIAMVGDGINDAPSLALADVGIALQTELQDNAASDAASIVLVGNKLSQVVDALDLAQATMAKVYQNLLWAVAYNAVAIPIAAGVLLPRFEFAMTPSLSGGLMALSSIFVVTNSLLLRLHQGTERSYSDLRQR* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01254 626 Gene3D - 42 173 - -
Pte3g01254 626 PANTHER ATP7, ISOFORM B 21 612 - -
Pte3g01254 626 SUPERFAMILY Calcium ATPase, transduction domain A 77 169 IPR008250 -
Pte3g01254 626 Gene3D - 277 550 IPR023214 -
Pte3g01254 626 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 288 383 IPR023299 GO:0000166
Pte3g01254 626 SUPERFAMILY HAD-like 285 607 IPR036412 -
Pte3g01254 626 Pfam E1-E2 ATPase 79 266 - -
Pte3g01254 626 SFLD C1.7: P-type atpase like 268 552 - -
Pte3g01254 626 Gene3D - 297 430 IPR023299 GO:0000166
Pte3g01254 626 FunFam Copper-transporting ATPase 1, putative 42 173 - -
Pte3g01254 626 NCBIfam HAD-IC family P-type ATPase 410 591 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pte3g01254 626 NCBIfam HAD-IC family P-type ATPase 73 311 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pte3g01254 626 SUPERFAMILY Calcium ATPase, transmembrane domain M 12 280 IPR023298 -
Pte3g01254 626 PRINTS P-type cation-transporting ATPase superfamily signature 286 300 - -
Pte3g01254 626 PRINTS P-type cation-transporting ATPase superfamily signature 119 133 - -
Pte3g01254 626 PRINTS P-type cation-transporting ATPase superfamily signature 499 518 - -
Pte3g01254 626 PRINTS P-type cation-transporting ATPase superfamily signature 422 433 - -
Pte3g01254 626 PRINTS P-type cation-transporting ATPase superfamily signature 444 454 - -
Pte3g01254 626 ProSitePatterns E1-E2 ATPases phosphorylation site. 288 294 IPR018303 -
Pte3g01254 626 Pfam haloacid dehalogenase-like hydrolase 282 513 - -
Pte3g01254 626 NCBIfam heavy metal translocating P-type ATPase 22 610 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pte3g01254 626 FunFam Copper-transporting ATPase PAA2, chloroplastic 297 430 - -
Pte3g01254 626 SFLD p-type atpase 268 552 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01254 Pte-Chr3 10684553 10691191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01254 21 618 Primary Pumps ATPases AT1G63440 36.513 2.11e-110 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01254 K17686 - gmx:100127402 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01254 3 10684553 10691191 Pte3g01254 3 10684553 10691191 RCT