Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01244 ATGGACGGCGGTGCTCCGGGCTACCCACGTACGGTAGAAGAAGTTTTTAGAGATTTCAAGGGTCGGAGAGCCGGGTTGATGAAGGCTCTAACTGCTGATGTCGAAGACTTCTATCAACGGTGTGATCCAGAAAAGGAAAATCTCTGCCTGTATGGATTTCCTAGTGAGCATTGGGAAGTTAACCTGCCAGCTGAGGAGGTGCCTCCAGAGTTTCCAGAACCTGCCTTGGGCATTAATTTTGCCAGAGATGGGATGCAAGAGAAGGATTGGCTGACTTTGGTCGCAGTCCACAGTGATACATGGTTACTTGCAGTGGCCTTTTATTTTGGTGCTAAGTGTGGACTTGATAAGGCTGATAGGAAGAAACTTTTTAGTATGATAAATGATCTTCCAACAGTATTCGAAGTTGTGACAGGAGCCGCCAAGAAACAAGCAAAGGAAAAATCAAATCATAGTAGCGACAAATCAAACACAAAGCAAGCTTCTGAATCCCAAGGGAAGCATTCTAAGGCAATTCAACCTAAGGATGATGATGAGAACGATCTGAAAGATGATGATGAGCATGGGGAGACATTATGTGGGGCTTGTGGTGAGCACTATGCGGGTGGCGAATTCTGGATATGCTGTGACATTTGCGAGAAGTGGTTCCATGGGAAATGTGTGAAGATCACCGCTGCAAGGGCTGCGCATATCAAGCAATATATATGCCCATCGTGCAGCAACAGCAAGAAAGCTCGCCCTTGA 744 0.4637 MDGGAPGYPRTVEEVFRDFKGRRAGLMKALTADVEDFYQRCDPEKENLCLYGFPSEHWEVNLPAEEVPPEFPEPALGINFARDGMQEKDWLTLVAVHSDTWLLAVAFYFGAKCGLDKADRKKLFSMINDLPTVFEVVTGAAKKQAKEKSNHSSDKSNTKQASESQGKHSKAIQPKDDDENDLKDDDEHGETLCGACGEHYAGGEFWICCDICEKWFHGKCVKITAARAAHIKQYICPSCSNSKKARP* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01244 247 ProSitePatterns Zinc finger PHD-type signature. 193 239 IPR019786 -
Pte3g01244 247 FunFam PHD finger alfin-like protein 185 241 - -
Pte3g01244 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 241 IPR013083 -
Pte3g01244 247 Pfam PHD-finger 193 241 IPR019787 -
Pte3g01244 247 CDD PHD_AL_plant 192 241 IPR044104 -
Pte3g01244 247 SMART PHD_3 192 240 IPR001965 -
Pte3g01244 247 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Pte3g01244 247 SUPERFAMILY FYVE/PHD zinc finger 184 244 IPR011011 -
Pte3g01244 247 ProSiteProfiles Zinc finger PHD-type profile. 190 242 IPR019787 -
Pte3g01244 247 MobiDBLite consensus disorder prediction 144 184 - -
Pte3g01244 247 PANTHER CPG BINDING PROTEIN 8 246 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01244 Pte-Chr3 10625952 10628047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01244 1 248 Alfin-like Transcription Factor Family AT3G42790 67.984 3.78e-108 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pte3g01244 Alfin 9.7e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01244 K26274 - rcu:8258558 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01244 3 10625952 10628047 Pte3g01244 3 10625952 10628047 RCT
Pte3g01244 3 10625952 10628047 Pte1g02445 1 45025455 45028455 RCT
Pte1g02445 1 45025455 45028455 Pte3g01244 3 10625952 10628047 RCT