Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01228 ATGACTAAAAGTGTGGTCTTAGATGAAAGCATGTCCATCTTGACTTCCGCATCTGGTGAAGTAAGTGCCTCTTCAGGTAGCAGGAACGACACTGTCAGCGCAAAACCTCATCAATTTTCTACTTCAACAAATCAGAAACCACAACCGAAGAAGAAGAGAGGTCTACAGGGAAATCCAGACCCAGATGCAGAGGTGATAGCCTTTTCTCCCAAATCTCTTCTAGCGACAAATCGATTCATTTGTGAGATCTGCAACAAGGGGTTTCAGAGAGAGCAGAATCTTCAACTCCATAGAAGAGGACATAATTTGCCATGGAAATTGAAACAAAGAACTAACAAAGAGGCCATCAGGAAGAAGGTGTATGTATGTCCAGAGCCAACCTGTGCTCATCATGACCCATCAAGAGCTCTGGGCGACCTCACAGGGATCAAGAAGCACTTCTCTAGAAAGCATGGAGAGAAAAAATGGAGATGTGAAAAGTGTTCCAAACGATACGCAGTTCAATCAGATTGGAAAGCTCATTCCAAAATTTGTGGTACTAGAGAGTACAGATGTGACTGTGGAACCATTTTCTCTAGAAGGGACAGTTTTATCACACACAGAGCTTTCTGTGATGCTTTAGCACAGGAGAACACCAGAGGAATAACAGCAATGATCCCGACAACAGTACCCTTCCATCCCCATCTTCAGAGTCACGGCCTTCAAGCCCTCTCCTCATCAGTGAAAAGTGAACCAGAACTCAATTCGCGGTCCCACCACATTCCACCATGGTTACAAGTTTGCGCACAAGTAGGAGAAAATCATGTTGATAATTTTGGTCTTCCACCAATGAACTTCTCTTCTTCGTTGCACTCGACAAATCTAAACCCTTCCCTACTTCTTCACCACGAAAACCCTAACCCTAATAGCACTATTGCTCCTTTACTTCCTTCTTTGCCATCCTCACCGCATATGTCTGCCACCAGTTTGCTTCAAAAAGCGTCACAAATCGGAGTGGCAATGAGTAAGCCCCTACCATCATTTACGATGCTTAGACCCCACCATCCGCATGTTCCTCAAGGTAGTACAAGAGCTCCAAGCTCCTCACCCTTGGGATCAGAAATGGGGAACGGTTTTTCTCATGGCTTGGCATCTTATACAAACCAGGTTGGAAGTCGTGCCTCTGGTAATTACATTGAAGAAGGTGGTACAGCGGATTCAAGACCTGAAGCTGCTTCCACTCTCCAAAATATGATGGGTTCATTGCCTTCTGCAAGTGCGTTTGGAAGATCATCTTCATTTGAAGAGGCTCTGAGTGGAATTCTGAATCCTCCAAGAGATGGTAACCATTTCCATGAAATTCTTTCAAAGTCAATGAGGATGCATGAGCAATCAATTAACGAAATGAATCATATCAATGGCGATGGTACTATGATCAGTGGAGTTTATAATGGCAATGACGAAACGACAAGAGATTTCTTGGGTCTCAAAGCAGTGTCCCGTGAACCGTTTTTCAGTACATCAGCCGGGTTTCATCAAACAGGTTCTATGTCGTACGGACAGCAGGATCAAAATCAAGCATCTTGGCATCAAGGTTAG 1578 0.4423 MTKSVVLDESMSILTSASGEVSASSGSRNDTVSAKPHQFSTSTNQKPQPKKKRGLQGNPDPDAEVIAFSPKSLLATNRFICEICNKGFQREQNLQLHRRGHNLPWKLKQRTNKEAIRKKVYVCPEPTCAHHDPSRALGDLTGIKKHFSRKHGEKKWRCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTIFSRRDSFITHRAFCDALAQENTRGITAMIPTTVPFHPHLQSHGLQALSSSVKSEPELNSRSHHIPPWLQVCAQVGENHVDNFGLPPMNFSSSLHSTNLNPSLLLHHENPNPNSTIAPLLPSLPSSPHMSATSLLQKASQIGVAMSKPLPSFTMLRPHHPHVPQGSTRAPSSSPLGSEMGNGFSHGLASYTNQVGSRASGNYIEEGGTADSRPEAASTLQNMMGSLPSASAFGRSSSFEEALSGILNPPRDGNHFHEILSKSMRMHEQSINEMNHINGDGTMISGVYNGNDETTRDFLGLKAVSREPFFSTSAGFHQTGSMSYGQQDQNQASWHQG* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01228 525 SUPERFAMILY beta-beta-alpha zinc fingers 78 176 IPR036236 -
Pte3g01228 525 MobiDBLite consensus disorder prediction 354 377 - -
Pte3g01228 525 MobiDBLite consensus disorder prediction 339 377 - -
Pte3g01228 525 Gene3D Classic Zinc Finger 63 128 - -
Pte3g01228 525 FunFam protein indeterminate-domain 12-like 58 127 - -
Pte3g01228 525 MobiDBLite consensus disorder prediction 16 51 - -
Pte3g01228 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 32 505 IPR031140 -
Pte3g01228 525 MobiDBLite consensus disorder prediction 16 63 - -
Pte3g01228 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Pte3g01228 525 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Pte3g01228 525 Gene3D Classic Zinc Finger 133 213 - -
Pte3g01228 525 FunFam protein indeterminate-domain 5, chloroplastic-like 134 213 - -
Pte3g01228 525 SMART c2h2final6 156 176 IPR013087 -
Pte3g01228 525 SMART c2h2final6 121 151 IPR013087 -
Pte3g01228 525 SMART c2h2final6 79 101 IPR013087 -
Pte3g01228 525 Pfam Zinc-finger double-stranded RNA-binding 79 101 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01228 Pte-Chr3 10468622 10471974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01228 7 331 IDZ Gene Family AT1G55110 53.779 4.65e-112 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte3g01228 zf-C2H2_jaz 2.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01228 K25870 - pop:7462254 531.176