Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01199 ATGGAGGGCTATAATAATCACCTGAACGAAAGCTCATCTTCGAGGGGTAATTTCCTGTACTCTCCTACTGCTGTTGCCTACGGAAGGAGCAGTAGTGGGGGCGGTTCAAGCATTGGAAATCATCATCAACAGTCCCAGATTCCAAGCAATAACTTTCACCTTCAATCAGGTAGAACAGAACAGTGTTTTCCATTAGATCAAGCGCATCCAACTGTAAAGATCGAAGCCAATCCATCGCACCCCAATCAAATTTTTCCTTACCCTTTGATGAGAGGCCCTCCGCACCAAACAGTTCATCATCTGCATCTAGGAGGAAGCGAAAGCACCGGGGATGTTGAAGCCATGAAAGCTAAAATTATAGCTCATCCTCAGTACTTTAACCTCTTGGAAGCTTTCATGGATTGTCAAAAGGTAGGAGCTACACCGGAAGTGGCTTCACGTCTGGCTGCGGTCCAGCAAGAGTACGAAGCACGACAACGGTCTTCAGTAACATCGAGAGAGAACTCAAAGGACCCAGAACTTGACCAGTTCATGGAAGCTTACTACGACATGCTTGTGAAGTATAGAGAGGAACTCGCTAGGCCTGTACAGGAAGCTATGGATTTCATGAGTAGAGTTGAATCTCAGCTTAGTGCGCTCAGCAATGGACTTGTTCGGATATTCCCTAGAGAGGATAAATGTGAAGGTGTATCGGAAGAGGATCAAGAGAACAGTGGTGAAGAAACAGAACGGCAAGAGATTGATCCTAGGGTTGGAGACAGGGAACTAAAAAGTCACTTGCTAAGAAAGTATAGTGGCTACTTAGGCAGCCTGAAGCAAGAACTGTCCAAGAAGAAGAAGAAAGGAAAATTGCCCAAAGATGCTAGGCAGAAGCTGCTTAGTTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCTGAGAAGGTGGCTTTGGCGGAATTAACTGGTCTGGATCAGAAACAAATAAACAATTGGTTTATAAATCAGAGGAAGCGACATTGGAAACCTTCTGAAGATATGCAATTTATGGTGATGGATGGGTCGCATCCCCAAAACGCAACTCTGTACATGAATAGCCATTATCTAGCTGATGGGCATTATCGTTTAGAGCCATGA 1122 0.4474 MEGYNNHLNESSSSRGNFLYSPTAVAYGRSSSGGGSSIGNHHQQSQIPSNNFHLQSGRTEQCFPLDQAHPTVKIEANPSHPNQIFPYPLMRGPPHQTVHHLHLGGSESTGDVEAMKAKIIAHPQYFNLLEAFMDCQKVGATPEVASRLAAVQQEYEARQRSSVTSRENSKDPELDQFMEAYYDMLVKYREELARPVQEAMDFMSRVESQLSALSNGLVRIFPREDKCEGVSEEDQENSGEETERQEIDPRVGDRELKSHLLRKYSGYLGSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAELTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGSHPQNATLYMNSHYLADGHYRLEP* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01199 373 ProSitePatterns 'Homeobox' domain signature. 313 336 IPR017970 GO:0000981|GO:0006355
Pte3g01199 373 MobiDBLite consensus disorder prediction 226 252 - -
Pte3g01199 373 MobiDBLite consensus disorder prediction 30 54 - -
Pte3g01199 373 Pfam ELK domain 255 276 IPR005539 GO:0003677
Pte3g01199 373 ProSiteProfiles ELK domain profile. 255 275 IPR005539 GO:0003677
Pte3g01199 373 CDD homeodomain 287 339 IPR001356 GO:0003677
Pte3g01199 373 Pfam KNOX2 domain 169 213 IPR005541 GO:0003677|GO:0005634
Pte3g01199 373 FunFam Homeobox protein knotted-1-like 2 280 342 - -
Pte3g01199 373 SMART ELK_2 255 276 IPR005539 GO:0003677
Pte3g01199 373 ProSiteProfiles 'Homeobox' domain profile. 275 338 IPR001356 GO:0003677
Pte3g01199 373 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 102 345 - -
Pte3g01199 373 Pfam KNOX1 domain 114 155 IPR005540 GO:0003677|GO:0005634
Pte3g01199 373 Gene3D - 280 342 - -
Pte3g01199 373 SMART KNOX1_2 113 157 IPR005540 GO:0003677|GO:0005634
Pte3g01199 373 SMART HOX_1 277 342 IPR001356 GO:0003677
Pte3g01199 373 SMART KNOX2_2 164 215 IPR005541 GO:0003677|GO:0005634
Pte3g01199 373 Pfam Homeobox KN domain 295 334 IPR008422 GO:0003677|GO:0006355
Pte3g01199 373 SUPERFAMILY Homeodomain-like 276 351 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01199 Pte-Chr3 10279442 10282406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01199 59 374 Homeobox Transcription Factor Family AT4G08150 63.720 9.27e-130 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pte3g01199 KNOX2 2.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01199 - - tcc:18591910 506.523