Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01187 ATGAGTTCTTTCTCTATTACAAGGAAAAAGACACCCTTCCAGAAGCACAGAGAAGAGGAGGAGGCAAAGAAAAAGAGAGCGGAAGATGAGACAGCTCGGTTGTACCAAGAATTTGTTGAATCATTTCAAGGAGATAATGCTCCTGGATCAAAGACATTTGTCCGGGGAGGTACCATTAATCCAAACGATAAATTGAAGAATGAGTCTGAAGGTGAAAAGTCCAAAGATGGGGTATCTGGTCCAAAGAAGGGGAGTAGGTATGTCCCATCTTTCTTACCACCTCCAATGGCAACCAAGCCAAAAGAATCTGAGAGGAAGAAAGAGGAGGAGAGGTCCAAGGAGAGAGAAAAAGTGAAAACTAGAAACATAGATAATTTCATGGAAGAACTTAAGCATGAGCAAGAAATGCGGGAAAGACGGAATCAAGATCGTGAGCACTGGCACGATAGTCGACATGGTGAACATTCCTCTTCTAGTCGCTTCGATGAACTGCCTGATGATTTTGATCCAAGTGGAAAAGGATCATTTGATGATGGCGATCCACAAACCACAAATCTCTATGTTGGGAATCTGTCACCAAAGGTTGATGAAAACTTCCTTCTTCGAACATTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATCATGTGGCCCAGGACTGAAGAGGAGCGAAGGCGGCAAAGAAATTGTGGCTTTGTTGCTTTCATGAACAGAGCTGATGGACAGGCTGCTAAAGATGAGATGCAAGGAGTTGTGGTTTATGAATATGAGTTGAAGATTGGATGGGGCAAATCTGTTGCTTTGCCATCACAAGCACTGCCAGCTCCACCACCAGGACACATGGCCATTAGGAGCAAGGAGGGTGCCACGGTAATCTTGTCTGGTCCATCAGGTCCTCCCGTCACTTCTGTCCCAAATCAGAATTCTGAACTGGTGCTTACACCAAATGTTCCTGATATAATGGTAATTCCTCCTGAGGATGATCATTTAAGGCATGTCATTGATACAATGGCTCTCTATGTTCTTGATGGTGGATGTGCTTTTGAACAAGCTATTATGGAGCGGGGACGTGGGAATCCATTATTCAACTTTTTGTTTGAGCTTGGATCTAAGGAGCATACTTACTATGTTTGGAGGCTTTATTCATTTTCTCAGGGTGATACACTTCAAAGATGGCGTACAGAACCTTTCATTATGATAACTGGTAGTGGGAGATGGATACCACCATCTTTGGCAACCCCAAAAAGTCCTGAGCATGATAAGGATTCTGGTTCTACATATGCTGCTGGAAGAAGCAGGCGTGTGGAGCCTGAATGCACCTTGATGGACTCACAGCGTGATGATTTTGAGGACATGCTGCGTGCTTTGACTTTAGAAAGGAATTTAATAAAAGAAGCTATGGCATTTGCTTTGGATAATGCTGATGCAGCTGGGGAGGTTGTCGAAATTCTAACTGAATCCTTGACTCTCAAAGAAACCCCAATTCCAACTAAAGTTGCAAGGCTCATGCTTGTCTCTGACATTCTTCATAATAGCAGTGCTCCGGTTAAGAATGCATCTGCATATCGTACCAAATTTGAAGCAACTCTACCGGACGTAATGGAGAGCTTCAATGACCTTTATCGGAGCATAACAGGAAGGATCACTGCTGAGGCCTTAAAGGAGCGAGTACTAAAAGTGTTGCAAGTATGGGCGGATTGGTTCCTGTTTTCAGATGCATATGTAAATGGTTTAAGAGCCACCTTTCTTCGTTCTGGAAACTCTGGTGTGATACCGTTCCATTCCCTCTGTGGCGATGCACCTGAAATTGACAAAAAGACCACCTCTGGGGACACAGGTGAGAGTGGCAACATGAACCCGAATGCTGCTTTGGCTATGGGTAAAGGAGCTGCTACGAGAGAGCTTATGAGTCTTCCCCTTGGTGAACTGGAAAGACGTTGCAGGCACAATGGGCTGTCCCTCGTTGGTGGCAGAGAAATGATGGTAGCCAGATTGCTAAGTCTAGAAGAGGCTGAAAGGCAGAGGGGATATGAATTGGATGATAACTTGAAATATGCTCAGAGTCAATCAGGTTTAGGTAAATATTCAAATAGTCAAAAAGAGACTACTGTGGAACCTGAACCAGTAGTTATGTCAGGGTGGAACTATTATGGAGAGGATGACGTGCAATCAGAAGCTAAAGCATCTGTACCTTTTCCCACAACTCTATCTACTCCACAGCGTGAGCTCAAAGTCTTCACGAAGAAAGAGAAGAATGATCCTGTTTTGCTTACCTCCAAATGGGCTCGAGAGGATGATGAAAGCGACGATGAGCAAAAGAAAAGTGGTAAGGGTCTTGGACTGAGTTACTCATCATCAGGCAGTGAGAATGTTGGTGATGGGACTGTTAAGGCCGAGGAAATGGAAGCCATGGCGGATACAAGTATATCAGCTCAATTCGATGGTGGAATGAATGAAGAGCTTAGACAGAAGTTTAGACGTCTGGAGGTTGATCTCATTGAGTACCGTGAATCCCTTGAGGAGAAAGGGATGAAAAATTCGGAGGAGATTGAATGTAAAGTTGCAACTCTCAGGAAACAGCTCCTATCTGAATATGGATTAGCAGATTCTAGTGAAGATGCTTCAGGAAATAGACGAACGTTGTCGGAGAGGAAGGATTCTCGTGATGTATCTAGGAAACGACATCGTGGCCGGAGCAGAAGCGAGAGTCCACATCGGAGATCCTCCATCAAGGAGAGGGATCGGGAGCTTGAAGGTGAGAGAGATAGGGATAAATATAGAGAGTTTGAAAGTGAGAGGGGCAATCGGGAACGGGTTCGTGAGAAGAGTGGAAGCAGAGAGAGGGATGATCATGATAGGGACCGAGGCAAAGATAGAGAGAGAGACTGGGACAGGGATAGAGACAGAAGACGAAGGATTAGGTGA 2925 0.4468 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYQEFVESFQGDNAPGSKTFVRGGTINPNDKLKNESEGEKSKDGVSGPKKGSRYVPSFLPPPMATKPKESERKKEEERSKEREKVKTRNIDNFMEELKHEQEMRERRNQDREHWHDSRHGEHSSSSRFDELPDDFDPSGKGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPNQNSELVLTPNVPDIMVIPPEDDHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFSQGDTLQRWRTEPFIMITGSGRWIPPSLATPKSPEHDKDSGSTYAAGRSRRVEPECTLMDSQRDDFEDMLRALTLERNLIKEAMAFALDNADAAGEVVEILTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDVMESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVIPFHSLCGDAPEIDKKTTSGDTGESGNMNPNAALAMGKGAATRELMSLPLGELERRCRHNGLSLVGGREMMVARLLSLEEAERQRGYELDDNLKYAQSQSGLGKYSNSQKETTVEPEPVVMSGWNYYGEDDVQSEAKASVPFPTTLSTPQRELKVFTKKEKNDPVLLTSKWAREDDESDDEQKKSGKGLGLSYSSSGSENVGDGTVKAEEMEAMADTSISAQFDGGMNEELRQKFRRLEVDLIEYRESLEEKGMKNSEEIECKVATLRKQLLSEYGLADSSEDASGNRRTLSERKDSRDVSRKRHRGRSRSESPHRRSSIKERDRELEGERDRDKYREFESERGNRERVREKSGSRERDDHDRDRGKDRERDWDRDRDRRRRIR* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01187 974 Pfam Surp module 331 383 IPR000061 GO:0003723|GO:0006396
Pte3g01187 974 Gene3D - 96 267 IPR012677 -
Pte3g01187 974 MobiDBLite consensus disorder prediction 757 776 - -
Pte3g01187 974 Gene3D Surp module 319 388 IPR035967 GO:0003723|GO:0006396
Pte3g01187 974 SUPERFAMILY Surp module (SWAP domain) 307 388 IPR035967 GO:0003723|GO:0006396
Pte3g01187 974 CDD cwf21_RRC1-like 817 866 IPR047491 -
Pte3g01187 974 Gene3D - 442 588 IPR008942 -
Pte3g01187 974 MobiDBLite consensus disorder prediction 866 974 - -
Pte3g01187 974 MobiDBLite consensus disorder prediction 11 35 - -
Pte3g01187 974 MobiDBLite consensus disorder prediction 778 792 - -
Pte3g01187 974 Pfam CID domain 448 576 IPR006569 -
Pte3g01187 974 MobiDBLite consensus disorder prediction 876 890 - -
Pte3g01187 974 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 265 IPR000504 GO:0003723
Pte3g01187 974 SMART 558neu5 448 583 IPR006569 -
Pte3g01187 974 MobiDBLite consensus disorder prediction 43 57 - -
Pte3g01187 974 Pfam cwf21 domain 822 864 IPR013170 -
Pte3g01187 974 SMART cwf21_2 817 866 IPR013170 -
Pte3g01187 974 SMART rrm1_1 185 261 IPR000504 GO:0003723
Pte3g01187 974 CDD RRM_SR140 183 266 IPR035009 -
Pte3g01187 974 ProSiteProfiles CID domain profile. 441 586 IPR006569 -
Pte3g01187 974 Coils Coil 17 37 - -
Pte3g01187 974 SUPERFAMILY RNA-binding domain, RBD 176 272 IPR035979 GO:0003676
Pte3g01187 974 MobiDBLite consensus disorder prediction 903 974 - -
Pte3g01187 974 PANTHER RNA PROCESSING PROTEIN LD23810P 1 903 - -
Pte3g01187 974 MobiDBLite consensus disorder prediction 757 793 - -
Pte3g01187 974 MobiDBLite consensus disorder prediction 1 189 - -
Pte3g01187 974 Gene3D - 817 868 - -
Pte3g01187 974 SMART surpneu2 331 385 IPR000061 GO:0003723|GO:0006396
Pte3g01187 974 MobiDBLite consensus disorder prediction 65 80 - -
Pte3g01187 974 MobiDBLite consensus disorder prediction 409 430 - -
Pte3g01187 974 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 258 IPR000504 GO:0003723
Pte3g01187 974 Coils Coil 818 838 - -
Pte3g01187 974 ProSiteProfiles SURP motif repeat profile. 333 376 IPR000061 GO:0003723|GO:0006396
Pte3g01187 974 MobiDBLite consensus disorder prediction 99 174 - -
Pte3g01187 974 SUPERFAMILY ENTH/VHS domain 444 583 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01187 Pte-Chr3 10178401 10185624 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01187 181 261 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 4.01e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01187 K12842 - qsu:112031059 1478.38