Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01182 ATGGAAGAACTTAAGCATGAGCAAGAAATGCGGGAAAGACGGAATCAAGATCGTGAGCACTGGCACGATAGTCGACATGGTGAACATTCCTTTTCTAGTCGCTTCGATGAACTGCCTGATGATTTTGATCCAAGTGGAAAAGGATCATTTGATGATGGCGATCCACAAACCACAAATCTCTATGTTGGGAATCTGTCACCAAAGGTTGATGAAAACTTCCTTCTTCGAACATTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATCATGTGGCCCAGGACTGAAGAGGAGCGAAGGCGGCAAAGAAATTGTGGCTTTGTTGCTTTCATGAACAGAGCTGATGGACAGGCTGCTAAAGATGAGATGCAAGGAGTTGTGGTTTATGAATATGAGTTGAAGATTGGATGGGGCAAATCTGTTGCTTTGCCATCACAAGCACTGCCAGCTCCACCACCAGGACACATGGCCATTAGGAGCAAGGAGGGTGCCACGGTAATCTTGTCTGGTCCATCAGGTCCTCCCGTCACTTCTGTCCCAAATCAGAATTCTGAACTGGTGCTTACACCAAATGTTCCTGATATAATGGTAATTCCTCCTGAGGATGATCATTTAAGGCATGTCATTGATACAATGGCTCTCTATGTTCTTGATGGTGGATGTGCTTTTGAACAAGCTATTATGGAGCGGGGACGTGGGAATCCATTATTCAACTTTTTGTTTGAGCTTGGATCTAAGGAGCATACTTACTATGTTTGGAGGCTTTATTCATTTTCTCAGGGTGATACACTTCAAAGATGGCGTACAGAACCTTTCATTATGATAACTGGTAGTGGGAGATGGATACCACCATCTTTGGCAACCCCAAAAAGTCCTGAGCATGATAAGGATTCTGGTTCTACATATGCTGCTGGAAGAAGCAGGCGTGTGGAGCCTGAATGCACCTTGATGGACTCACAGCGTGATGATTTTGAGGACATGCTGCGTGCTTTGACTTTAGAAAGGAATTTAATAAAAGAAGCTATGGCATTTGCTTTGGATAATACTGATGCAGCTGGGGAGGTTGTCGAAATTCTAACTGAATCCTTGACTCTCAAAGAAACCCCAATTCCAACTAAAGTTGCAAGGCTCATGCTTGTCTCTGACATTCTTCATAATAGCAGTGCTCCGGTTAAGAATGCATCTGCATATCGTACCAAATTTGAAGCAACTCTACCGGACGTAATGGAGAGCTTCAATGACCTTTATCGGAGCATAACAGGAAGGATCACTGCTGAGGCCTTAAAGGAGCGAGTACTAAAAGTGTTGCAAGTATGGGCGGATTGGTTCCTGTTTTCAGATGCATATGTAAATGGTTTAAGAGCCACCTTTCTTCGTTCTGGAAACTCTGGTGTGATACCGTTCCATTCCCTCTGTGGCGATGCACCTGAAATTGACAAAAAGACCACCTCTGGGGACACAGGTGAGAGTGGCAACATGAACCCGAATGCTGCTTTGGCTATGGGTAAAGGAGCTGCTACGAGAGAGCTTATGAGTCTTCCCCTTGGTGAACTGGAAAGACGTTGCAGGCACAATGGGCTGTCCCTCGTTGGTGGCAGAGAAATGATGGTAGCCAGATTGCTAAGTCTAGAAGAGGCTGAAAGGCAGAGGGGATATGAATTGGATGATAACTTGAAATATGCTCAGAGTCAATCAGGTTTAGGTAAATATTCAAATAGTCAAAAAGAGACTACTGTGGAACCTGAACCAGTAGTTATGTCAGGGTGGAACTATTATGGAGAGGATGACGTGCAATCAGAAGCTAAAGCATCTGTACCTTTTCCCACAACTCTATCTACTCCACAGCGTGAGCTCAAAGTCTTCACGAAGAAAGAGAAGAATGATCCTGTTTTGCTTACCTCCAAATGGGCTCGAGAGGATGATGAAAGCGACGATGAGCAAAAGAAAAGTGGTAAGGGTCTTGGACTGAGTTACTCATCATCAGGCAGTGAGAATGTTGGTGATGGGACTGTTAAGGCCGAGGAAATGGAAGCCATGGCGGATACAAGTATATCAGCTCAATTCGATGGTGGAATGAATGAAGAGCTTAGACAGAAGTTTAGACGTCTGGAGGTTGATCTCATTGAGTACCGTGAATCCCTTGAGGAGAAAGGGATGAAAAATTCGGAGGAGATTGAATGTAAAGTTGCAACTCTCAGGAAACAGCTCCTATCTGAATATGGATTAGCAGATTCTAGTGAAGATGCTTCTGGAAATAGACGAACGTTGTCGGAGAGGAAGGATTCTCGTGATGTATCTAGGAAACGACATCGTGGCCGGAGCAGAAGCGAGAGTCCACATCGGAGATCCTCCATCAAGGAGAGGGATCGGGAGCTTGAAGGTGAGAGAGATAGGGATAAATATAGAGAGTTTGAAAGTGAGAGGGGCAATCGGGAACGAGTTCGTGAGAAGAGTGGAAGCAGAGAGAGGGATGATCATGATAGGGACCGAGGCAAAGATAGAGAGAGAGACTGGGACAGGGATAGAGACAGAAGACGAAGGATTAGGTGA 2547 0.4495 MEELKHEQEMRERRNQDREHWHDSRHGEHSFSSRFDELPDDFDPSGKGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPNQNSELVLTPNVPDIMVIPPEDDHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFSQGDTLQRWRTEPFIMITGSGRWIPPSLATPKSPEHDKDSGSTYAAGRSRRVEPECTLMDSQRDDFEDMLRALTLERNLIKEAMAFALDNTDAAGEVVEILTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDVMESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVIPFHSLCGDAPEIDKKTTSGDTGESGNMNPNAALAMGKGAATRELMSLPLGELERRCRHNGLSLVGGREMMVARLLSLEEAERQRGYELDDNLKYAQSQSGLGKYSNSQKETTVEPEPVVMSGWNYYGEDDVQSEAKASVPFPTTLSTPQRELKVFTKKEKNDPVLLTSKWAREDDESDDEQKKSGKGLGLSYSSSGSENVGDGTVKAEEMEAMADTSISAQFDGGMNEELRQKFRRLEVDLIEYRESLEEKGMKNSEEIECKVATLRKQLLSEYGLADSSEDASGNRRTLSERKDSRDVSRKRHRGRSRSESPHRRSSIKERDRELEGERDRDKYREFESERGNRERVREKSGSRERDDHDRDRGKDRERDWDRDRDRRRRIR* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01182 848 Coils Coil 692 712 - -
Pte3g01182 848 Pfam CID domain 322 450 IPR006569 -
Pte3g01182 848 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 139 IPR000504 GO:0003723
Pte3g01182 848 MobiDBLite consensus disorder prediction 631 667 - -
Pte3g01182 848 ProSiteProfiles SURP motif repeat profile. 207 250 IPR000061 GO:0003723|GO:0006396
Pte3g01182 848 MobiDBLite consensus disorder prediction 740 848 - -
Pte3g01182 848 Pfam Surp module 205 257 IPR000061 GO:0003723|GO:0006396
Pte3g01182 848 SMART surpneu2 205 259 IPR000061 GO:0003723|GO:0006396
Pte3g01182 848 MobiDBLite consensus disorder prediction 1 48 - -
Pte3g01182 848 Gene3D Surp module 193 262 IPR035967 GO:0003723|GO:0006396
Pte3g01182 848 SMART rrm1_1 59 135 IPR000504 GO:0003723
Pte3g01182 848 CDD RRM_SR140 57 140 IPR035009 -
Pte3g01182 848 ProSiteProfiles CID domain profile. 315 460 IPR006569 -
Pte3g01182 848 Gene3D - 691 742 - -
Pte3g01182 848 SUPERFAMILY Surp module (SWAP domain) 181 262 IPR035967 GO:0003723|GO:0006396
Pte3g01182 848 Gene3D - 1 141 IPR012677 -
Pte3g01182 848 SMART 558neu5 322 457 IPR006569 -
Pte3g01182 848 PANTHER RNA PROCESSING PROTEIN LD23810P 1 777 - -
Pte3g01182 848 MobiDBLite consensus disorder prediction 652 666 - -
Pte3g01182 848 SUPERFAMILY RNA-binding domain, RBD 50 146 IPR035979 GO:0003676
Pte3g01182 848 Pfam cwf21 domain 696 738 IPR013170 -
Pte3g01182 848 MobiDBLite consensus disorder prediction 750 764 - -
Pte3g01182 848 SUPERFAMILY ENTH/VHS domain 318 457 IPR008942 -
Pte3g01182 848 MobiDBLite consensus disorder prediction 631 650 - -
Pte3g01182 848 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 132 IPR000504 GO:0003723
Pte3g01182 848 MobiDBLite consensus disorder prediction 1 56 - -
Pte3g01182 848 SMART cwf21_2 691 740 IPR013170 -
Pte3g01182 848 Gene3D - 316 462 IPR008942 -
Pte3g01182 848 MobiDBLite consensus disorder prediction 777 848 - -
Pte3g01182 848 MobiDBLite consensus disorder prediction 283 304 - -
Pte3g01182 848 CDD cwf21_RRC1-like 691 740 IPR047491 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01182 Pte-Chr3 10090350 10096140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01182 55 135 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.10e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01182 K12842 - zju:107419873 1292.72