Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01167 ATGGTCAAGTGTGAAAGGAACAGTGTGGGTTCTTTGGTTCTTGCCCACCACCATCCCACTATCACATCCTCTTCCGGGGGCATTTTCCGACTATGGTCCTTGTTTTCCACCTCTTCTTTCCGTCGGAAAATCTTTGAAGCTGTCAGTTGCGTTGGCAGTTGTCGGTTCCATGATCGCTATGATGACCTTGATTCCATTACGAGTCCCGGGTTTTCGACGCCAGCAACTGAGAAATCAACTTTCACCGAGAAACTGAAGCAAATGCAGCGAGAGCCGCAGGAAGAGGAGAAGGAGAAGACGCGCAAGGCTACAGCTTTGATTTCCATTACCAAGTTGAAAGCGAAAAAAGGGAATGCCAAGACGGAAAGACTGGCAGATCTTCTGAATCAGGCGGAGGCTGAGATTGTCGCAGAGATGAAGAAAAAGGTGGAATCTTTGGACGAACTGAAGCAAGTGGTAAAAGAGTTGCAGGTGGAGGATACCGAAAAGGCTAGAACGGCTGCAAGCAGAGTAAGGTTAATGGCGAAAGAAAATTCAGAAGTGAGAGGGACAATCGCAATGCTTGGTGCCATTCCACCTCTCGTTGGGATGCTGGATGTGGAAGATGTTGATTCTCAGATATCATCTCTCTATGCGTTACTCAATCTTGGGATTGGGAACGATGCGAACAAATCAGCTATTGTCAAAGCTGGGGCTATCCAGAAGATGCTAAGGCTCATTGAATCCGATTCCTCTCCTGCACAAAACTCATCAGTTTCTGAAGCAATTGCTGCAAATTTCCTTGGATTGAGTGCATTGGATCCCAACAAACACATAATTGGATCCTCAGCTGCAGTGCCTTTCTTGGTTAAAACCCTTCAGGACAATGAGGGTAGCTCCCAGACCATCCTAGACGCACTCCGAGCTCTGTACAATCTTTCTATCTTTCCCACAAACATTTCATTCATGTTGGAAACTGATTTGGTTCCCTTTCTATTGAACACCCTGGGGGACATGGAAGTAAGTGAAAGAATCCTTGCAATATTGAGCAATTTAGTATCGACTCAGGAGGGTCGTAGAGCAATTAGTATTGTGCCAGATGCATTTCCGATTCTGGTTGATGTGCTTAATTGGACTGACTCACCGGGGTGCCAAGAAAAAGCTTCATATATTTTGATGGTCATGGCACACAAATCCTATGGAGACAGGCAAGTTATGATTGAAGCGGGGATTGCATCTTCCTTGCTTGAGTTAACATTACTGGGAACAACACTAGCACAGAAGAGGGCATCGAGGCTCTTGGAATGTTTGAGATTGGATAAAGTGAAGCAATTATCGGGGAATTATGGTAGCAACTGGGTTGGAAATGTATCTGCTCCTATATGTGGATATGCGTCGTCATCTGCAAATCTAAAGGAGTCGCCAGAAGATGAAGATATGATGAGTGCAGAGAAGATAGCAGTCAAGCATTTAGTTCAGCAGAGTTTGCAGAACAACATGAAGATAATTGTCAAGAGGGCGAACTTGCCTCAAGATCTCGTTCCGGCAGATCATTTCAAGTCACTTACTTTAAGTGCCACTTCAAAGAGCTTGCCATTTTGA 1581 0.451 MVKCERNSVGSLVLAHHHPTITSSSGGIFRLWSLFSTSSFRRKIFEAVSCVGSCRFHDRYDDLDSITSPGFSTPATEKSTFTEKLKQMQREPQEEEKEKTRKATALISITKLKAKKGNAKTERLADLLNQAEAEIVAEMKKKVESLDELKQVVKELQVEDTEKARTAASRVRLMAKENSEVRGTIAMLGAIPPLVGMLDVEDVDSQISSLYALLNLGIGNDANKSAIVKAGAIQKMLRLIESDSSPAQNSSVSEAIAANFLGLSALDPNKHIIGSSAAVPFLVKTLQDNEGSSQTILDALRALYNLSIFPTNISFMLETDLVPFLLNTLGDMEVSERILAILSNLVSTQEGRRAISIVPDAFPILVDVLNWTDSPGCQEKASYILMVMAHKSYGDRQVMIEAGIASSLLELTLLGTTLAQKRASRLLECLRLDKVKQLSGNYGSNWVGNVSAPICGYASSSANLKESPEDEDMMSAEKIAVKHLVQQSLQNNMKIIVKRANLPQDLVPADHFKSLTLSATSKSLPF* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01167 526 Gene3D - 145 431 IPR011989 -
Pte3g01167 526 Coils Coil 114 159 - -
Pte3g01167 526 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 277 307 IPR000225 GO:0005515
Pte3g01167 526 SMART arm_5 266 308 IPR000225 GO:0005515
Pte3g01167 526 SMART arm_5 309 347 IPR000225 GO:0005515
Pte3g01167 526 SMART arm_5 220 265 IPR000225 GO:0005515
Pte3g01167 526 SMART arm_5 178 218 IPR000225 GO:0005515
Pte3g01167 526 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 22 526 - -
Pte3g01167 526 SUPERFAMILY ARM repeat 148 419 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01167 Pte-Chr3 9962345 9964389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01167 147 428 U-box Gene Family AT3G46510 37.847 1.32e-33 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01167 - - qsa:O6P43_015754 620.542