Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01160 ATGGCCAGGCCACAACAGCGATACCGAGGCGTTCGACAAAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGTCACCCTTTGTTGAAGACTAGAATTTGGTTAGGCACATTTGAAACAGCTGAAGATGCTGCCAGAGCGTATGACGAAGCAGCAAGGTTGATGTGTGGTCCGAGGGCAAGAACCAATTTCCCCTACAATCCCAATGCATCAAAGTCACCATCTTCGAAGGTTCTCTCAGCAACCTTGACAGCGAAACTGCACAAGTGCTGCATGGCTTCCCTGAAAATGACCAAACCAACCGTACAAGAGCCTCAAAGATTGAATTCACTGAGTTGCATCCCGACAAGCACCGTTAATCTTGGGGGAACCAGGGAGCAATATACAAAAAGATTGCCAGATCAAGAAACAGAGACCAATTGGGTCGTGGAGAAAGTTAAAGTTGAAAATGATCCGCAGTTGAAGCCTCTGGAAGAAGATCACATCGAGCAAATGATCGAGGAGTTGCTTGACTATAGCTCCATTGAACTCTGTTCTGTCGTGCCACCTCAAGCAATGTGA 558 0.4749 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNASKSPSSKVLSATLTAKLHKCCMASLKMTKPTVQEPQRLNSLSCIPTSTVNLGGTREQYTKRLPDQETETNWVVEKVKVENDPQLKPLEEDHIEQMIEELLDYSSIELCSVVPPQAM* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01160 185 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Pte3g01160 185 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 108 - -
Pte3g01160 185 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Pte3g01160 185 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Pte3g01160 185 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Pte3g01160 185 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Pte3g01160 185 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Pte3g01160 185 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Pte3g01160 185 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Pte3g01160 185 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01160 Pte-Chr3 9921821 9922549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01160 1 186 AP2-EREBP Transcription Factor Family AT5G25190 68.449 2.70e-79 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte3g01160 AP2 7.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01160 - - qsa:O6P43_015742 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01160 3 9921821 9922549 Pte3g01160 3 9921821 9922549 RCT