Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01124 ATGCGCACTCTTCGATTACAACTTGGTTGGGACTATGAGATCGATGCGTTTCGTGATTTCCTCAAAGTCTCACTAGCAGTTGTGAATATTGGAGCAACCAAACACGAGCCTTGGTGTCAGGAAAATGTTTCAAATGCTTCGTCTGTTCCTTTCAGATGTATATGTCTGACTGACCCTTGTTTTGTCCCCATGTTGTCAGCAACTATATGTCTCATGGTGGTGACTGGTCATTGCAGTGCTGCTTCATTTATTCCAGTTGTTCAAGAGCCATGGATTAATTATCAAACTTGTGTAGGTGAAACTTTATTGCTGAAGAGAAGGGTATGGCTAGGGACATTTGAAACAGCAGAGGCTGCAGCAAGGGCATATGATCAAGCATCCATTTTGATGAATGGTCAAAATGCCAAGACCAATTTCCCGACCTCCAAGAATCACAATGAAGATGTCAAACCTAGTCATGACACTTCTTCCTTGTCCTCCAAGGCTTTCTCGGAGCTGCTGAGCACAAAGCTCAGGAGGTGTTGCAAAGAACCCTCTCCATCTCTCACTTGCCTCAGGCTGGATGCTGACAATTCCCACATTGGCGTGTGGCAAAAGCGTGCTGGACCACATTCTGGCTCCAATTGGGTCATGAGGGTGCAGCTCGGGAAGAAGGAGGGTCAAGGTTTTGATGGTAAAGAGTTGAACCCCAAGTTTCAGAGTGAGGTTGCTAATGGAATGGATGAAGAGGATATGATTTCCATGCAGATGATTGAGGAATTGCTCAACTGGAATCATCCAAGTCCTTCAAGCAATATTGATGATCAGGGAGATGCTAGAAGTCTTCCTTGCTTTGGTCCTTGA 843 0.452 MRTLRLQLGWDYEIDAFRDFLKVSLAVVNIGATKHEPWCQENVSNASSVPFRCICLTDPCFVPMLSATICLMVVTGHCSAASFIPVVQEPWINYQTCVGETLLLKRRVWLGTFETAEAAARAYDQASILMNGQNAKTNFPTSKNHNEDVKPSHDTSSLSSKAFSELLSTKLRRCCKEPSPSLTCLRLDADNSHIGVWQKRAGPHSGSNWVMRVQLGKKEGQGFDGKELNPKFQSEVANGMDEEDMISMQMIEELLNWNHPSPSSNIDDQGDARSLPCFGP* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01124 280 MobiDBLite consensus disorder prediction 135 157 - -
Pte3g01124 280 Pfam AP2 domain 105 132 IPR001471 GO:0003700|GO:0006355
Pte3g01124 280 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
Pte3g01124 280 SUPERFAMILY DNA-binding domain 86 142 IPR016177 GO:0003677
Pte3g01124 280 CDD AP2 83 142 IPR001471 GO:0003700|GO:0006355
Pte3g01124 280 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700|GO:0006355
Pte3g01124 280 Gene3D AP2/ERF domain 83 142 IPR036955 GO:0003700|GO:0006355
Pte3g01124 280 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 82 224 - -
Pte3g01124 280 MobiDBLite consensus disorder prediction 258 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01124 Pte-Chr3 9609028 9611491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01124 80 264 AP2-EREBP Transcription Factor Family AT5G25390 50.267 4.92e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte3g01124 AP2 5.8e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01124 - - qsu:111994332 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01124 3 9609028 9611491 Pte3g01124 3 9609028 9611491 RCT
Pte2g02234 2 42148135 42148984 Pte3g01124 3 9609028 9611491 RCT
Pte3g00313 3 2563782 2565003 Pte3g01124 3 9609028 9611491 RCT
Pte1g00879 1 17597424 17621712 Pte3g01124 3 9609028 9611491 RCT