Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01100 ATGTTGTTTCTCATCTTTTGGGGTTCAAGCTCATACGGGTTGGATGTATATATTCACGATTATCTTGTGAAGAGGGATTTGAAGGCTTCAGCTCAGGCTTTCCAAGCTGAAGGGAATGTATCTTCTGATCCAGTTGCTATTGATGCTCCTGGAGGTTTTTTGTTTGAATGGTGGTCGGTGTTCTGGGATATATTCATTGCCAGGACAAATGAGAAACACTCAGAGATCGCCGCATCTTATATCGAGACTCAGTTAATGAAGGCACGGGAGCAGCAGCAGCAGCCACATTCCCAACAATCACACCAGCAGCAGCAGCAACATATGCAGATGCAGCAAATCATATTACAGAGGCATGCTCTGCAGCAGCAACAACAACCTCACACACAGCAACAACAGCCAACATCACAGCAACAACGGCGAAGAGATGGTGCTCAATTCCTCAATGGAACCAGCAATTCACTAATTGGAAATGATCCACTGTCGAGACAGAACTCTGCCACTGCAAATGTATTGGCCACAAAGATGTATGAGGAAAGGTTATTGCCCATGCAGAGAGATTCCTTGGATAATGCTGCAATGAAGCAAAGATTTGGTGAGAACGTTGGTCAACTCTTGGATCAAAACCATGCCTCAAAATTAAAGTCAGCTGCAGCCTCTGGCCAAACTTCAGGGCCAGTATTACATGGTTCTGCTGATGGCATGTCACCACAAGTTCAATCTCGTAGTCAGCAACTCTCAGGGCCAACTATGGATGTAAAAAGTGAGATGAATCAAGTTTCAAATCCAAGAGCTGCAGGCCCTGAGGGATCTTTGTTAGGAGGTCCTGGGTCAAATCAAGGTGCTAACAATTTGACACTAAAAGGCTGGCCTCTGACAGGGTTAGACCCGCTCCGTTCCGGGCTTCTCCAGCAACAAAAGCCTTTTATACAAGCTCCTCAGCCTTTTCACCAAATTCAGATGTTAACAGCTCAGCATCAGCAGCAGCTTATGCTTGCAGCATCTCCATCTGCCAGTGAGGAGAATAGAAGACTCAGAATGCTATTAAGCAACCGAAATATGGGCCTCGGAAATGATGGGCTTTCAAATCCTATCAGAGATGCAGTTCCAAATGTTGGGTCACCTCTTCAACCTGGTGGTCCTCTGTTACCGCGAGGAGATACAGATATACTAATTAAGTTGAAGATGGCCCAGTTACAGCAGCAGCAGCAGAGCAGCAGCCAACAACAGCAGCTTCTGCAACTTCAGCAGCAAACTCTTTCAAATCAGCAAATACAGAGTTCAAATCACACTATTCATCAAGATAAACTGGGGGGAGGTGGCAGTGTCACTATTGATGGTAGCATGTCGAATGCCTTCAGAGGAAATGAGCAGGTTTCAAAAAATCAAACCGGAAGAAAGAGAAAGCAGCCAGTCTCGTCTTCAGGCCCTGCCAATAGTTCAGGGACAGCAAATGCTGCTGGTCCTTCTCCAAGCTCAGCACCCTCAACACCTTCAACTCATACTCCTGGAGATGCAATATCAATGCCTGCTTTGCCCAATAGCAGTAACTCCAAGCCTTTGATGATGTTTGGTGCTGATGGTTCAGGTACTCTTGCATCATCTTCAAACCATTTGGCTGATATGGACCGTCTCGTAGATGATGGATCTCTTGATGATAATGTGGAGTCCTTCTTATCACCAGATGATATTGACCCCAGGCCCAGGGACAAAAGTGGCTTTACATTCAAAGAAGTAAATTCAGTGCGGGCAAGCACAAGCAAAGTTGTTTGCTGCCACTTCTCATCAGATGGAAAATTATTAGCTAGTGGTGGCCATGATAAGAAGGCTATATTATGGTACACTGATTCGCTGAAGGCAAAAACAACTCTTGAAGAACATTCATCTCTGATTACTGATGTCCGCTTCAGTCCAAGCATGCCACGACTTGCAACATCTTCGTTTGATAAAACTGTCAGAGTTTGGGATTTTGACAATCCTGGCTATTCACTTCGCACCTTTACTGGACATTCAGCAACGGTCATGTCACTAGACTTCCATCCTAACAAAGATGACCTAATATGCTCTTGTGATGGAGATGGGGAGATTCGATATTGGAGTATAAACAATGAAAGCTGTGCCAGGGTCTTTAAGGGTGGGACGACACAAATGAGATTTCAACCCCGTCTTGGGCAATACCTGGCTGCAGCAGCTGAGAACGTTGTTTCCATACTTGATGTGGAGACACAGGCCTGTCGATATTCCTTGAAGGGACATGGTAAGTCAATTCATTCAGTATGCTGGGATCCTTCTGGCGAGTTTCTAGCATCTGTGAGTGAGGACTCTGTCAGAGTTTGGACACTTGGACCAGGGAGTGAAGGGGAATGTGTTCATGAACTAAGCTGTAGTGGTAATAAGTTCCACTCGTGTGTTTTCCATCCAGCATATACTTCTTTGCTGGTTATCGGCTGTTACCAGTCTTTGGAACTTTGGAACATGACTGAAAACAAGTCAGTGATCCTCTCGGAGGCCCACGAAGGTCTTATTGCTGCGTTGGCAGTGTCAACTGTGACAGGTTTGGTTGCTTCAGCAAGTCATGATAAAGTAGTAAAGCTTTGGAAGTGA 2601 0.4541 MLFLIFWGSSSYGLDVYIHDYLVKRDLKASAQAFQAEGNVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEIAASYIETQLMKAREQQQQPHSQQSHQQQQQHMQMQQIILQRHALQQQQQPHTQQQQPTSQQQRRRDGAQFLNGTSNSLIGNDPLSRQNSATANVLATKMYEERLLPMQRDSLDNAAMKQRFGENVGQLLDQNHASKLKSAAASGQTSGPVLHGSADGMSPQVQSRSQQLSGPTMDVKSEMNQVSNPRAAGPEGSLLGGPGSNQGANNLTLKGWPLTGLDPLRSGLLQQQKPFIQAPQPFHQIQMLTAQHQQQLMLAASPSASEENRRLRMLLSNRNMGLGNDGLSNPIRDAVPNVGSPLQPGGPLLPRGDTDILIKLKMAQLQQQQQSSSQQQQLLQLQQQTLSNQQIQSSNHTIHQDKLGGGGSVTIDGSMSNAFRGNEQVSKNQTGRKRKQPVSSSGPANSSGTANAAGPSPSSAPSTPSTHTPGDAISMPALPNSSNSKPLMMFGADGSGTLASSSNHLADMDRLVDDGSLDDNVESFLSPDDIDPRPRDKSGFTFKEVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAILWYTDSLKAKTTLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDFDNPGYSLRTFTGHSATVMSLDFHPNKDDLICSCDGDGEIRYWSINNESCARVFKGGTTQMRFQPRLGQYLAAAAENVVSILDVETQACRYSLKGHGKSIHSVCWDPSGEFLASVSEDSVRVWTLGPGSEGECVHELSCSGNKFHSCVFHPAYTSLLVIGCYQSLELWNMTENKSVILSEAHEGLIAALAVSTVTGLVASASHDKVVKLWK* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01100 866 Gene3D - 715 866 IPR015943 GO:0005515
Pte3g01100 866 ProSiteProfiles Trp-Asp (WD) repeats profile. 834 866 IPR001680 GO:0005515
Pte3g01100 866 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 623 658 - -
Pte3g01100 866 CDD WD40 577 866 - -
Pte3g01100 866 Pfam LisH 14 38 IPR006594 GO:0005515
Pte3g01100 866 SMART WD40_4 785 824 IPR001680 GO:0005515
Pte3g01100 866 SMART WD40_4 616 655 IPR001680 GO:0005515
Pte3g01100 866 SMART WD40_4 659 699 IPR001680 GO:0005515
Pte3g01100 866 SMART WD40_4 741 779 IPR001680 GO:0005515
Pte3g01100 866 SMART WD40_4 827 866 IPR001680 GO:0005515
Pte3g01100 866 SMART WD40_4 702 738 IPR001680 GO:0005515
Pte3g01100 866 SMART WD40_4 574 613 IPR001680 GO:0005515
Pte3g01100 866 ProSiteProfiles Trp-Asp (WD) repeats profile. 666 708 IPR001680 GO:0005515
Pte3g01100 866 ProSiteProfiles Trp-Asp (WD) repeats profile. 748 780 IPR001680 GO:0005515
Pte3g01100 866 MobiDBLite consensus disorder prediction 212 264 - -
Pte3g01100 866 MobiDBLite consensus disorder prediction 443 521 - -
Pte3g01100 866 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 622 IPR001680 GO:0005515
Pte3g01100 866 FunFam Transcriptional corepressor LEUNIG 709 866 - -
Pte3g01100 866 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 834 866 - -
Pte3g01100 866 ProSitePatterns Trp-Asp (WD) repeats signature. 642 656 IPR019775 -
Pte3g01100 866 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 42 IPR006594 GO:0005515
Pte3g01100 866 SUPERFAMILY WD40 repeat-like 574 866 IPR036322 GO:0005515
Pte3g01100 866 ProSiteProfiles Trp-Asp (WD) repeats profile. 623 658 IPR001680 GO:0005515
Pte3g01100 866 MobiDBLite consensus disorder prediction 212 283 - -
Pte3g01100 866 PANTHER TRANSCRIPTION ACTIVATOR MSS11 12 866 - -
Pte3g01100 866 Gene3D - 565 714 IPR015943 GO:0005515
Pte3g01100 866 MobiDBLite consensus disorder prediction 87 142 - -
Pte3g01100 866 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 666 702 - -
Pte3g01100 866 Pfam WD domain, G-beta repeat 580 612 IPR001680 GO:0005515
Pte3g01100 866 Pfam WD domain, G-beta repeat 744 778 IPR001680 GO:0005515
Pte3g01100 866 Pfam WD domain, G-beta repeat 662 699 IPR001680 GO:0005515
Pte3g01100 866 Pfam WD domain, G-beta repeat 621 655 IPR001680 GO:0005515
Pte3g01100 866 MobiDBLite consensus disorder prediction 425 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01100 Pte-Chr3 9375658 9383951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01100 660 865 Miscellaneous Gene Families AT5G08390 26.190 1.76e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pte3g01100 WD40 8.5e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01100 - - twl:119996625 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01100 3 9375658 9383951 Pte3g01100 3 9375658 9383951 RCT