Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01088 ATGGGAGAGGTGGCAGTATTGCAATCTGAGCACTTGCCCTTCATTTGCAATGATGTGATGCCATTGCATGATGAAGAGAATGAATCAAAGGCAACAGGCTCTCACAAATCATGTGAAGATAGCATGGTTACTGAAGAACTGACAGATTGTGCTGAGAACTCGGAGATGCTAGACAAAGGATTCATGGAATATGGATGTCAGCATTATCGCAGGCGTTGCCGCATTAGAGCTCCTTGTTGCAATGAGATATTTGATTGTCGTCATTGCCATAATGAAGTGAAAAATAGTATCAACGTTGATTGGAAGTTCAGACATGACATTCCCCGTCACCAAGTGAAACAGGTGATATGTTCCCTTTGTGGCACAGAGCAGGAGGTTAAGCAAAATTGTGTGAGCTGCGGCGTGTGTATGGGGAAATATTTTTGTGACACTTGCAAGCTCTTTGATGATGACGTAACAAAACAGCAGTATCATTGCAATGGGTGTGGAATTTGCAGAACTGGGGGGCACGAGAATTTTTTCCACTGTCACAAGTGCGGTTGTTGTTACTCTGTCCTGCTCAAGAATAGTCACCCGTGTGTGGAAGGAGCAATGCATCATGATTGTCCTGTTTGCTTTGAGTACTTATTCGAGTCGAGAAATGATGTGACGGTGATGCCTTGTGGACATACGATTCACAAGAACTGCCTGAAGGAAATGAGAGACCATTTTCAATATGCATGCCCTCTCTGCTCCAAGTCAGTCTGTGATATGACTAAGGTGTGGGAGAAATTTGACATGGAGATTGCTGCTACACCTATGCCTGAAATATACCAAAATAAAATGGTATGGATCCTATGCAATGATTGTGGTAAAACATCAAATGTGCAGTACCATGTTGTGGCTCAAAAATGCTTACACTGTAAATCTTACAACACAAGACAAACGAGATGCTAA 936 0.4263 MGEVAVLQSEHLPFICNDVMPLHDEENESKATGSHKSCEDSMVTEELTDCAENSEMLDKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEVKNSINVDWKFRHDIPRHQVKQVICSLCGTEQEVKQNCVSCGVCMGKYFCDTCKLFDDDVTKQQYHCNGCGICRTGGHENFFHCHKCGCCYSVLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIHKNCLKEMRDHFQYACPLCSKSVCDMTKVWEKFDMEIAATPMPEIYQNKMVWILCNDCGKTSNVQYHVVAQKCLHCKSYNTRQTRC* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01088 311 Gene3D - 273 311 - -
Pte3g01088 311 ProSiteProfiles Zinc finger RING-type profile. 202 245 IPR001841 -
Pte3g01088 311 Pfam Ring finger domain 201 244 IPR001841 -
Pte3g01088 311 Pfam Zinc-ribbon 249 307 IPR039512 -
Pte3g01088 311 ProSiteProfiles Zinc finger CHY-type profile. 59 135 IPR008913 GO:0008270
Pte3g01088 311 ProSiteProfiles Zinc finger CTCHY-type profile. 137 201 IPR017921 -
Pte3g01088 311 SMART ring_2 202 244 IPR001841 -
Pte3g01088 311 Pfam CHY zinc finger 66 147 IPR008913 GO:0008270
Pte3g01088 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 247 IPR013083 -
Pte3g01088 311 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 39 310 - -
Pte3g01088 311 SUPERFAMILY CHY zinc finger-like 63 137 IPR037274 GO:0008270
Pte3g01088 311 SUPERFAMILY RING/U-box 201 249 - -
Pte3g01088 311 SUPERFAMILY Zinc hairpin stack 138 195 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01088 Pte-Chr3 9308256 9313533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01088 64 307 C2H2 Transcription Factor Family AT3G18290 39.600 2.92e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01088 K10144 - qsa:O6P43_019385 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01088 3 9308256 9313533 Pte3g01088 3 9308256 9313533 RCT