Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01072 ATGTTCTCTGGCAGCCAATTCGACGCTACCTCCGCCTTCGGCGGCGGTGGATTCATGGCTTCTCAATCTACCCAATCTAACGACGGAACCCCTTTCCAAACAAAAAACCGTGAAACCCAGGGCTTGGTACCAGTGACAGTGAAGCAGATAAGTGAAGCGTCTCATTCAGGCGACGAGAAGTCTAATTTCATAATCAACGGGGCTGATGTTACCAATGTTACTATGGTTGGAATGGTTTTTGATAAAGCTGTGAGAACTACTGACGTGAGTTTTAATCTTGATGACGGAACAGGACGGATTGGTGCTAGAAGATGGGTAAACGAGGTCTTTGATACGAGGGAAATGGATGGAATAAAGGATGGCATGTATGTACGCGTCCATGGGCATTTGAAAACCTTTCAAAATGTCAGGCAATTAGTTGCCTTTTCAGTTAGGCCTGTGACAAATTTTGATGAGATCGCCTTCCACTTCATTGATTGCATCCATAATCATTTGCAGTCAAAGCAAAAGCTGCAAACTCTTGCTCCTACAGAGCCCATACCAGTGAATCAATCTTCAAACAGTCTTGCACCACCAAATACAATCTACGGCCAATTCAGTGCAGATGGGCTAAAGGATTGTGATAAGTTGGTCCTTGACTATTTAAATCAGCACTCGGGCATGGATGATGAAAGGGGAGTGCATGTTAATGAAATGGCGCGTGAGCTTAAACTTCCCGTAGATAAGATCATGGTGTCCCTCAAGACTCTAGGAGATGATGGCTTAGTATACTCTACAATCGATGACTTCCATTACAAACAAGCTTGA 807 0.4411 MFSGSQFDATSAFGGGGFMASQSTQSNDGTPFQTKNRETQGLVPVTVKQISEASHSGDEKSNFIINGADVTNVTMVGMVFDKAVRTTDVSFNLDDGTGRIGARRWVNEVFDTREMDGIKDGMYVRVHGHLKTFQNVRQLVAFSVRPVTNFDEIAFHFIDCIHNHLQSKQKLQTLAPTEPIPVNQSSNSLAPPNTIYGQFSADGLKDCDKLVLDYLNQHSGMDDERGVHVNEMARELKLPVDKIMVSLKTLGDDGLVYSTIDDFHYKQA* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01072 268 SUPERFAMILY "Winged helix" DNA-binding domain 202 266 IPR036390 -
Pte3g01072 268 SUPERFAMILY Nucleic acid-binding proteins 42 166 IPR012340 -
Pte3g01072 268 Gene3D - 38 169 IPR012340 -
Pte3g01072 268 FunFam Replication protein A 32 kDa subunit 199 268 - -
Pte3g01072 268 CDD RPA2_DBD_D 72 165 - -
Pte3g01072 268 PANTHER REPLICATION PROTEIN A-RELATED 6 266 IPR040260 -
Pte3g01072 268 Gene3D - 197 268 IPR036388 -
Pte3g01072 268 MobiDBLite consensus disorder prediction 18 41 - -
Pte3g01072 268 PIRSF RPA32 1 268 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pte3g01072 268 FunFam replication protein A 32 kDa subunit A-like 35 169 - -
Pte3g01072 268 Pfam Replication protein A C terminal 166 262 IPR014892 -
Pte3g01072 268 Pfam OB-fold nucleic acid binding domain 73 145 IPR004365 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01072 Pte-Chr3 9109326 9111559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01072 1 266 Core DNA Replication Machinery Family AT2G24490 46.182 3.53e-87 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01072 K10739 - qsa:O6P43_015598 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01072 3 9109326 9111559 Pte3g01072 3 9109326 9111559 RCT