Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01055 ATGTCTCGAGTCTACGTTGGAAATTTGGATTCACGTGTCTCTGAACGTGATCTTGAAGACGAGTTCCGTGTCTTTGGAACTATACGGAGTGTCTGGGTTGCACGAAGACCACCTGGGTATGCGTTTATTGACTTTGATGACCGAAGGGACGCACAGGACGCTATTCGTGAATTGGATGGTAAGAATGGTTGGAGAGTAGAACTTTCTCACAACTCTAGAGGAGGAGGAGGTGGTGGTGGTCGTGGAGGGGGTCGTGGGCGATCTGGTGGTTCCGATTTGAAATGCTACGAGTGTGGTGAACCTGGACATTTTGCTCGTGAATGCCAGTCTCGTGGTGGCTCTGGTAGACGTCGTAGCCGTAGTCCAGTGAGATTTCGCAGGAGTCCAAGTTATGGTCGAAGGAGTTATAGTCCTCGTGGCAGGTCTCCAAGACGCCGGAGTCCCTCTCCTAGAAAACGCAGTTATAGCAGGTCACCTGGTTATCGTGGGCGTGAGGATGTTCCATACACTAATGGGTTAAATCCACAGTTCACTAGGATTATGAAATTTGCTGCTTCTTGGTTGTGTAAGGAAGTTCAATTTGCAAATTTGGAGCTTAATTTCTTCTGGGGATTCTACGTTTAA 624 0.4824 MSRVYVGNLDSRVSERDLEDEFRVFGTIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECQSRGGSGRRRSRSPVRFRRSPSYGRRSYSPRGRSPRRRSPSPRKRSYSRSPGYRGREDVPYTNGLNPQFTRIMKFAASWLCKEVQFANLELNFFWGFYV* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01055 207 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Pte3g01055 207 MobiDBLite consensus disorder prediction 138 152 - -
Pte3g01055 207 CDD RRM_SRSF3_like 3 71 - -
Pte3g01055 207 SMART c2hcfinal6 94 110 IPR001878 GO:0003676|GO:0008270
Pte3g01055 207 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Pte3g01055 207 Gene3D - 2 69 IPR012677 -
Pte3g01055 207 SMART rrm1_1 3 69 IPR000504 GO:0003723
Pte3g01055 207 SUPERFAMILY Retrovirus zinc finger-like domains 87 112 IPR036875 GO:0003676|GO:0008270
Pte3g01055 207 ProSiteProfiles Zinc finger CCHC-type profile. 94 110 IPR001878 GO:0003676|GO:0008270
Pte3g01055 207 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 159 - -
Pte3g01055 207 MobiDBLite consensus disorder prediction 66 89 - -
Pte3g01055 207 Pfam Zinc knuckle 94 109 IPR001878 GO:0003676|GO:0008270
Pte3g01055 207 Gene3D - 71 128 - -
Pte3g01055 207 MobiDBLite consensus disorder prediction 106 171 - -
Pte3g01055 207 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Pte3g01055 207 SUPERFAMILY RNA-binding domain, RBD 3 89 IPR035979 GO:0003676
Pte3g01055 207 FunFam Serine/arginine-rich splicing factor RSZ22A 91 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01055 Pte-Chr3 8976252 8978070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01055 2 60 Eukaryotic Initiation Factors Gene Family AT2G36660 38.095 1.25e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01055 K12896 - aew:130757244 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01055 3 8976252 8978070 Pte3g01055 3 8976252 8978070 RCT