Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01054 ATGGTACTGAAGAAGTCCAGAATGAAAAACGAGAGTTTTTCAGAGTCACCATCGGAGCCAGAATCCATGAGCTCTGTGTCTTACAGTTCCCCCGAAGAAGATGTTGCTATGTGCCTTATGATGCTTTCTAGGGACACGTGGAGTAGAAATACCGAGGAGCAAGATCAAGTTGAGCAAGAAGTTCAAACATTTGAGAAGAAAGGAAGAGGACCAAAGGATGACCCAAAATCCAAAAGGATTCGAGGAAAGCATCAGTGTGAGAACTGCAGGAAAACATTTAGATCCTCCCGTGCATTGAACAGTCACAAAAGGATTTGTTTTCCTGATGATGCTCTTGCAGGTAACAGCAATGAGAAAATTTTCGAATGCCCATTCTGTTTCCAATTACATTCTCGTATCACAGGCAGTAAGCACTTTAAGCAAAACATCACCACCTTCCGTACAGCCACTGTCGGTACATAA 462 0.4286 MVLKKSRMKNESFSESPSEPESMSSVSYSSPEEDVAMCLMMLSRDTWSRNTEEQDQVEQEVQTFEKKGRGPKDDPKSKRIRGKHQCENCRKTFRSSRALNSHKRICFPDDALAGNSNEKIFECPFCFQLHSRITGSKHFKQNITTFRTATVGT* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01054 153 Gene3D Classic Zinc Finger 81 144 - -
Pte3g01054 153 MobiDBLite consensus disorder prediction 1 31 - -
Pte3g01054 153 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 9 129 IPR044303 GO:0006355
Pte3g01054 153 MobiDBLite consensus disorder prediction 15 31 - -
Pte3g01054 153 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 105 IPR013087 -
Pte3g01054 153 MobiDBLite consensus disorder prediction 49 83 - -
Pte3g01054 153 SUPERFAMILY beta-beta-alpha zinc fingers 83 126 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01054 Pte-Chr3 8972412 8972873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01054 14 129 C2H2 Transcription Factor Family AT2G45120 34.375 1.38e-15 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte3g01054 None None None