Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01019 ATGTTTGATTGTAGGCAATCTCAAGGATTTCAGGCAATGTGCATGAACACTTGCTTGTCACGCTCTTATATGAAGTACTGGTCTTGGTTAGGCTTGTCCATTGAAGTTGTTTACTTCTTCCATATTGCTCAAGCACAAGACACAGAAGACTCTAATAAACAACAAGGTCCCCTTCCAACCCCAAGTACAGGAGTTATCATCTCGGTACTCACTGTTATATTCTGTGTCACATGTCTCTTGCTAGTCTATGCAAAATTCTGCCGAAGCAACCCAGCTGCACCGAACCATGTTCGTCGTCGCCAGACTCTTGGAGGGCTTGTTCGATCGCAGTCTGGACTTTCTGGAATTGATAAAACGATAATTGAATCACTACCTTTCTTCAAATTCTCTTCAATTAGAGGATCAAAGGAAGGCCTGGAATGTGCAATTTGCATATCGAAATTTGAAGACGAGGAGACTCTCAGGATGTTGCCAAAGTGTAAGCATGCGTTTCATATGAAATGTATTGACCAGTGGCTTGCAAGTCACTCCAGCTGCCCTCTGTGTAGGTACAAGAGAGAGCTAGGGAATCATCAAGAGTCTTCAAGGTTTGGAAGCAGCTTCAGGAACATGCACAAGAGCAAAGAATTAGAGGAGGTGCTTATTGGTAACCAAGGAAATACAAGCTGTGATGACAATGGTAACTGGAAACTATGGGATAAATTCAATCACAAGATAGTCATATCTGGCGTTGTTACAAGGAGCAGGTGGAGTGACTTAAACTCTTCAGACTTATTATCCTTAAAATCTGAGATGTTGATGGATGCATCGGGCAAAAAATTCTCTAATTTGGAATCAATCAACAGTAGGAATTTCCATGATACTAATGATGATGAAGTGGACTGGCGGAGGCTATGTGAGTCTAAGTTTAACCAAACAGATACGCGGGATGAAAATTCAGCGAGTGCATTGAACCCTGCAGAGAAGAGGTCGATTTCTGAGATCACACATGTTTCAAGGTTTGTAGGAACAAGCACGAGAAGCAGGTCAATCTATGAAGTCACTGAAAAGAATGAGAAAGAAGAGAGATTAAGGAGGATTTGGTTGACACTAGCCAGGGGAACAATTCAATTGTTTGCAGGACGACAAGGTAGGTTGCAGGACCAAAAATTGAAAAGACCAGTTTCATTCGTTTGA 1176 0.4192 MFDCRQSQGFQAMCMNTCLSRSYMKYWSWLGLSIEVVYFFHIAQAQDTEDSNKQQGPLPTPSTGVIISVLTVIFCVTCLLLVYAKFCRSNPAAPNHVRRRQTLGGLVRSQSGLSGIDKTIIESLPFFKFSSIRGSKEGLECAICISKFEDEETLRMLPKCKHAFHMKCIDQWLASHSSCPLCRYKRELGNHQESSRFGSSFRNMHKSKELEEVLIGNQGNTSCDDNGNWKLWDKFNHKIVISGVVTRSRWSDLNSSDLLSLKSEMLMDASGKKFSNLESINSRNFHDTNDDEVDWRRLCESKFNQTDTRDENSASALNPAEKRSISEITHVSRFVGTSTRSRSIYEVTEKNEKEERLRRIWLTLARGTIQLFAGRQGRLQDQKLKRPVSFV* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01019 391 CDD RING-H2_EL5-like 140 183 - -
Pte3g01019 391 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 47 375 - -
Pte3g01019 391 SMART ring_2 141 182 IPR001841 -
Pte3g01019 391 SUPERFAMILY RING/U-box 120 186 - -
Pte3g01019 391 FunFam RING-H2 finger protein ATL43 116 188 - -
Pte3g01019 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 190 IPR013083 -
Pte3g01019 391 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Pte3g01019 391 Pfam Ring finger domain 140 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01019 Pte-Chr3 8712716 8714251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01019 61 376 C3H Transcription Factor Family AT2G20030 37.978 7.96e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01019 K10664 - qsa:O6P43_015505 288.5