Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01017 ATGCGTAGTTGGGGTAAATGGGTGTCTGAAATTCGTGAGCCCAGAAAGAAATCACGTATATGGTTGGGTACATTTCCCAACCCTGAAATGGCTGCCAGAGCACATGATGTTGCTGCTTTGAGTATCAAAGGTAACTCTGCCATTCTCAATTTTCCAGAACTTGTGAACTCGCTACCTCGCCCGGCGTCGGTATCTCCGAAAGATATTCAGGCAGCAGCAGCAAAAGCGGCTGAAATGGATAACTTCCATCCACCATCATTTCCTTCTTCTTCTTCTTCAACTTTGTCATCCTCCTCTTCATTGTCTTCACTGGTATCTGCGATGGAATTGTCAACTGGGTCCGAGGAATTGAGCGAGATAGTGACTCTGCCAAGCTTAGATGATCATTGCGGGGTGAAAGAGTTGGCAAATGAGTTCATATTGACGGAGTCTCCGGATGAATGGATTTATACTCCACCATGGTTGCAGAGCGTGCAAGCAAGTGATGCGTACGTGGAAGAGTTTGCCATGCCAGAAAGTAACACGTCAAATGGCTATCCCAGTTTCCTATGGAACAATTAG 561 0.4617 MRSWGKWVSEIREPRKKSRIWLGTFPNPEMAARAHDVAALSIKGNSAILNFPELVNSLPRPASVSPKDIQAAAAKAAEMDNFHPPSFPSSSSSTLSSSSSLSSLVSAMELSTGSEELSEIVTLPSLDDHCGVKELANEFILTESPDEWIYTPPWLQSVQASDAYVEEFAMPESNTSNGYPSFLWNN* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01017 186 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
Pte3g01017 186 SUPERFAMILY DNA-binding domain 2 53 IPR016177 GO:0003677
Pte3g01017 186 Gene3D AP2/ERF domain 1 54 IPR036955 GO:0003700|GO:0006355
Pte3g01017 186 SMART rav1_2 1 58 IPR001471 GO:0003700|GO:0006355
Pte3g01017 186 Pfam AP2 domain 2 44 IPR001471 GO:0003700|GO:0006355
Pte3g01017 186 CDD AP2 1 54 IPR001471 GO:0003700|GO:0006355
Pte3g01017 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01017 Pte-Chr3 8702359 8702919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01017 1 157 AP2-EREBP Transcription Factor Family AT5G11590 67.500 1.20e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte3g01017 AP2 9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01017 K09286 - tcc:18587975 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01017 3 8702359 8702919 Pte3g01017 3 8702359 8702919 RCT