Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00988 ATGGAGCTCAATGGAAATGATTTGTTGGATGAATTACTTGCTCTAAGAACAGAAACATGGGAAACCGATCGGTCATTTCCAAGCAGTTTGAGTTTTTATAGCTTTGATCATTACTATAATAACCCTCTTGCCACTCTTCCGCATTCTTCCTGTCGAAGTGTCTACGAAGATTTCAATAACTACTGCACGTTTAATGATATCTACAGTCCTTGTCTTGGTGAATTCTCAAGAACCCAGATCACTGGCTCATCCTACAACGCTGTTGATACCTCCCTCGGTCATGCTCTTCCTTGCAAAGCTCAAGAAGAATACGCGTACCCTTTGATGCCTCAAGAGGAATACGCACATCCTTTGATACCTCAAGAAGAATACCCGTTGTCAGTAGTTGAAGAAGATGATCCACGTCTTGTAGGGATGGATCTTGGCAACGTGGAATCACCAATGAATTGTAAAGTGGAGCCAATGCAATCCCAAGAAATGATCCAAGTTTTCAACTTTGGTACTTGTCTAGAAAGAAAGAATCGAGCACAGAAAATGCAGGGTCGTCAGCCTTCTAAAAATTTGATGGCGGAGAGAAGAAGAAGAAAGAGACTCAATGATCGCCTTTCCATGCTGAGAGCAATAGTCCCAAAGAGAAGCAAGATGGATAGAACATCTGTACTAGGGGACACGATAGCGTACGTGAAAGAATTATTGGAAAGGATTAACAAACTGCAGCAAGAAAGTGAAGATACTGACGTGAAGTCAAACATGGAGAGCATAATTTTGAGTTTCAAAGATACAAAAGCGAACGAAATGTTAGTGAGAAACTCACCCAAGTTTGATGTGGAGAAGAGCGATGATGATACTAGGGTTCATATCTGCTGTGCTGGCAAACCAGGGTTATTGCAGACAATGGTGAATACTTTGGAAGCTTTAGGTCTTCATATTGAACAGTGTCTTATTAGCTGTTTCCATGATTTTGCAATGCAGGCTTCTTGCTCGGAGGAATTGGATGGTAAAACTGCAACAGCGACTTCTGAAGATATAAAGCGAGCATTGTTCAGAAATGGTGGCCATGGTGGAAGGTGTTTGTAG 1077 0.4169 MELNGNDLLDELLALRTETWETDRSFPSSLSFYSFDHYYNNPLATLPHSSCRSVYEDFNNYCTFNDIYSPCLGEFSRTQITGSSYNAVDTSLGHALPCKAQEEYAYPLMPQEEYAHPLIPQEEYPLSVVEEDDPRLVGMDLGNVESPMNCKVEPMQSQEMIQVFNFGTCLERKNRAQKMQGRQPSKNLMAERRRRKRLNDRLSMLRAIVPKRSKMDRTSVLGDTIAYVKELLERINKLQQESEDTDVKSNMESIILSFKDTKANEMLVRNSPKFDVEKSDDDTRVHICCAGKPGLLQTMVNTLEALGLHIEQCLISCFHDFAMQASCSEELDGKTATATSEDIKRALFRNGGHGGRCL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00988 358 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 155 349 - -
Pte3g00988 358 Gene3D - 190 259 IPR036638 GO:0046983
Pte3g00988 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 246 IPR036638 GO:0046983
Pte3g00988 358 Coils Coil 228 248 - -
Pte3g00988 358 SMART finulus 188 237 IPR011598 GO:0046983
Pte3g00988 358 Pfam Helix-loop-helix DNA-binding domain 188 231 IPR011598 GO:0046983
Pte3g00988 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00988 Pte-Chr3 8383857 8385498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00988 172 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 56.383 1.24e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte3g00988 HLH 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00988 - - qsa:O6P43_015421 370.548