Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00951 ATGACTATCACTCAGGTGGTAAAGGTTCAGAGGAAGAAGCTAGAAGCATGCATGACTTGCCCTCTGTGTAATAAATTGTTCAGAGATGCCACCACCATATCAGAATGCCTCCATACTTTTTGCAGGAATTGCATATATGTGAAGATAACGGAAGAATATTCAGATCGCTGTCCAGTGTGCAATATTGATTTAGGCTGTGCTCCACTGGAGAAACTAAGGGCTGATAATAGCATGCAAGACTTGATTTACAAAATCTTCCCCCAAGAAAATAAACCTGAGGCAGAGGTTTCAATTCCATTGCCAATTAGAAGAAAGGAGAGATCTCTCTCTTCATTAGGGATCAACACAGCTAGGAAATCAAGTCAATTGGGTGTAAACGCAAGAAGAGCCAAGTCTTATGCAAGAAAGAATATTGCTCTACGAAAATCATTAATTATTTCTGTCGATGAAAATAATACAGAAAATGAAAAAGAGAAGAAAGATCATGTCGAAACTGAGAATTTGAGTCAAAAGCCTCCTATAGGAAACGAGAGTCCTCCAAAACATGATCCTCCCAATCAACCTGTGCTCAAAGAGGTTTATGATATTGCTGAATCTTGTGTTGAGAAGTCTGATTTGTGGAAGTCGTTGAATAGCTTAGCAAATATTGCAGCTAGCTCAAGATCTGGAAAAACCATAGTGGAGGATGATATTGTAGAGATTGTCCCAGAAGAACCTCGACAAAATGAAGCTCAAAATCCCAGGATTAAAAGGAAGGGACGTGGTTTTAGATACAAAAGCTTTGTGGATGACAATGGACAAGCACCTGAAACATCATATCCATTAAAGCCTAAAAGGTTGAAAGCTATACGGAAAGAACGAGCAGATAAAACTAAGATTTTGAATATTCCAGCACAAGCTGCGGTTGATATGAGTACTAAACCTGATACACAATTTTGTCCAATATGGTTCTCATTGAATGCTTGTGACAACAAGGTAGGATATGCTCCTCTGCGGCAGATTCCATCATGCTGCTTGAGGATTAGGGATGGAAATGTACCTGTCACCTTCATTCAGAAGTATCTTGCTCAGAAACTTGATCTTGCGAGTGAGACAGAGGGCGAGCCAATGCTACCTACATTGCGACTGAATCAAGTTGTAGACTACTGGCTGCAGTCGGCGACAACATCTGAGAGGATACAGACATCAGTTGGGAGCAGTGGTATGGAGTTTGTGATGCCCCTTTCATATGCTAGAAATAGAAGGCCAATATGTTGA 1257 0.4049 MTITQVVKVQRKKLEACMTCPLCNKLFRDATTISECLHTFCRNCIYVKITEEYSDRCPVCNIDLGCAPLEKLRADNSMQDLIYKIFPQENKPEAEVSIPLPIRRKERSLSSLGINTARKSSQLGVNARRAKSYARKNIALRKSLIISVDENNTENEKEKKDHVETENLSQKPPIGNESPPKHDPPNQPVLKEVYDIAESCVEKSDLWKSLNSLANIAASSRSGKTIVEDDIVEIVPEEPRQNEAQNPRIKRKGRGFRYKSFVDDNGQAPETSYPLKPKRLKAIRKERADKTKILNIPAQAAVDMSTKPDTQFCPIWFSLNACDNKVGYAPLRQIPSCCLRIRDGNVPVTFIQKYLAQKLDLASETEGEPMLPTLRLNQVVDYWLQSATTSERIQTSVGSSGMEFVMPLSYARNRRPIC* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00951 418 FunFam Polycomb group RING finger protein 3 4 105 - -
Pte3g00951 418 MobiDBLite consensus disorder prediction 152 188 - -
Pte3g00951 418 CDD RING-HC_PCGF 18 61 - -
Pte3g00951 418 SMART ring_2 20 60 IPR001841 -
Pte3g00951 418 MobiDBLite consensus disorder prediction 152 167 - -
Pte3g00951 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 106 IPR013083 -
Pte3g00951 418 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Pte3g00951 418 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Pte3g00951 418 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 416 IPR044807 GO:0004842
Pte3g00951 418 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Pte3g00951 418 SUPERFAMILY RING/U-box 14 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00951 Pte-Chr3 8012857 8015777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00951 1 342 C3H Transcription Factor Family AT2G30580 38.418 4.95e-60 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00951 K16277 - cave:132179402 353.984