Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00950 ATGACAACCATGGTGGAAAAAGAGCATGATCTGAACTTGAAGGAGACTGAGCTTTGTTTGGGATTGCCTGGTGGAATTGGAATTGAGTCAGAGACTCCCAAGTCTGCTGGAAAGAGAGGGTTTTCAGAGACCATTGATCTCAAGCTTAATCTTCATTCAAAGGAAGAGGTAGATCAAAAAAATGCTACGAAGGAGAGGAGTCTCCTTTCTGGTGCTAAAGATCCTGCAAAGCCGGCAGCTAAGGCACAAGTTGTGGGTTGGCCACCAGTCCGATCTTACAGAAAGAATGCAATGACAGTACAGAAGAACAACGCTGAGGAGGGTGAGAAGGGTAGCAACAACATCAGCAGTGTTGCATTTGTCAAAGTCTCCATGGATGGTGCACCATACCTGCGTAAGGTGGACTTGAAGATGTACAAGAGTTATCAAGAGCTATCTGATGCCTTGGCCAAGATGTTCAGTTCCTTCACCATGGGTAACTATGGGCCCCAAGGAATGATAGACTTCATGAATGATAGCAAGTTGATGGACCTTCTGAACAGTTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGGGACTGGATGCTCGTGGGCGATGTCCCATGGGAGTAA 615 0.4618 MTTMVEKEHDLNLKETELCLGLPGGIGIESETPKSAGKRGFSETIDLKLNLHSKEEVDQKNATKERSLLSGAKDPAKPAAKAQVVGWPPVRSYRKNAMTVQKNNAEEGEKGSNNISSVAFVKVSMDGAPYLRKVDLKMYKSYQELSDALAKMFSSFTMGNYGPQGMIDFMNDSKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWE* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00950 204 ProSiteProfiles PB1 domain profile. 118 204 IPR000270 GO:0005515
Pte3g00950 204 FunFam Auxin-responsive protein 113 204 - -
Pte3g00950 204 SUPERFAMILY CAD & PB1 domains 113 204 - -
Pte3g00950 204 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 203 IPR003311 GO:0005634|GO:0006355
Pte3g00950 204 Pfam AUX/IAA family 34 204 IPR033389 -
Pte3g00950 204 MobiDBLite consensus disorder prediction 56 75 - -
Pte3g00950 204 Gene3D - 113 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00950 Pte-Chr3 8008762 8010549 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00950 116 203 B3 DNA Binding Superfamily AT3G61830 35.227 1.24e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pte3g00950 AUX_IAA 8.8e-67 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00950 K14484 - qsa:O6P43_021493 310.842