Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00949 ATGACACAGCCCCACCAGCCAATCAGATCATTCCGTAAGAACAGCCTACAGCCAAAGAAGACTGAAACTGAAGCCTCTGGAAGTTATGTGAAAGTAAGCATGGATGGAGCCCCTTACCTCAGAAAGATTGACTTGAGGGTTTACAAAGGTTATCCAGAACTCATGAAAGCTGTAGAGAACATGTTCAAGCTCACCATAGGTGAGTACTCGGAAAGAGAAGGATACAAAGGATCTGAATATGCACCTACATATGAAGATAAGGATGGCGACTGGATGCTAGTAGGAGATGTTCCGTGGGACATGTTTATAACGTCCTGCAAAAGACTGAGAATCATGAAAGGGTCAGAAGCTAGAGGTCTGGGTTGTGGTGTATGA 375 0.4453 MTQPHQPIRSFRKNSLQPKKTETEASGSYVKVSMDGAPYLRKIDLRVYKGYPELMKAVENMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFITSCKRLRIMKGSEARGLGCGV* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00949 124 ProSiteProfiles PB1 domain profile. 27 114 IPR000270 GO:0005515
Pte3g00949 124 Pfam AUX/IAA family 7 121 IPR033389 -
Pte3g00949 124 MobiDBLite consensus disorder prediction 1 27 - -
Pte3g00949 124 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 118 IPR003311 GO:0005634|GO:0006355
Pte3g00949 124 Gene3D - 21 124 - -
Pte3g00949 124 FunFam Auxin-responsive protein 22 124 - -
Pte3g00949 124 SUPERFAMILY CAD & PB1 domains 22 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00949 Pte-Chr3 8000043 8001431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00949 18 123 B3 DNA Binding Superfamily AT4G23980 34.862 1.36e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pte3g00949 AUX_IAA 2.1e-48 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00949 K14484 - pvy:116130828 230.72