Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00930 ATGGCGGGACCAGAGGACAAACCTACTGCTACAACTTCATCACAAGGTGTCAGCATTGAGGAGACGTCTCTGAAAGAAAAGGGCAATGAGTTTTTTAAAGCAGGGAACTTTCTTAAAGCTGCTGCAATCTACACTCAAGCCATAAAGCAAGATCCTTCTAACCCAACTCTCTATAGCAACCGTGCTGCAGCATTTATGCAATTGGCTAAGCTGACTAAAGCACTCGCTGATGCTGAGACAACCATTACTTTAAACCCACAATGGGAAAAGGGCTATTTCAGGAAAGGATGTGTTCTAGAAGCCATGGAACGTTATGATGATGCGTTAACTGCCTTTCAAATGGCTTTGCGATATAACCCTAAAAGTCAGGAAGTATCAAGAAAGATAAAACAAACAAACCAGCTTGTGAAAGATAAGAGGCGCACCAAAGAAGTTGAATATATGAGATCCAATGTGGAAATGGGAAGACATTTAGGTGCACTGAAACATGAGATGGTTAGTATAATTTCACGTGCGATGTCTCAAAAGTATGGATCTGAAGAGTGCTGTAAGGAAATATTCTCTTTTCTTTTGGAGACAATGGAGACTGCTGTGAAAACGTGGAACAAAACATCTAATGTGGATGCCCGAGTCTACTTCCTTCTTGACAAGGAAAGAACAGAGGCTGATAAATATGCTCCTATGGTGAACATTGATAAGGCCTTTGAATCGCCTCACACACACAGCAGCTGCTTTCCATTCCTTAGACAATATGCTGAGGATTCATTTTCCCAGGCCGCTTGCTTAGTGACTCCAAAAAGCATCATATCTTATCCACAGGTTTGGAAAGGTCAAGGTTCAAGAAAGTGGAGGCACGGGCAGCATGATGGTTTCTTTATTCAATTTGAGTCCCCTGGTGTGCGAAAGTTGTGGTTCATTCCTAGTTCCAGTGAAATGGGGCAAACGATATGCAGGGATCCAGAGTTGCTGGACATCAGTGCTCATGAACTCCTTCCTCGGATATTTAAAGAAAAGCTGTTCCGTGACTAG 1029 0.4266 MAGPEDKPTATTSSQGVSIEETSLKEKGNEFFKAGNFLKAAAIYTQAIKQDPSNPTLYSNRAAAFMQLAKLTKALADAETTITLNPQWEKGYFRKGCVLEAMERYDDALTAFQMALRYNPKSQEVSRKIKQTNQLVKDKRRTKEVEYMRSNVEMGRHLGALKHEMVSIISRAMSQKYGSEECCKEIFSFLLETMETAVKTWNKTSNVDARVYFLLDKERTEADKYAPMVNIDKAFESPHTHSSCFPFLRQYAEDSFSQAACLVTPKSIISYPQVWKGQGSRKWRHGQHDGFFIQFESPGVRKLWFIPSSSEMGQTICRDPELLDISAHELLPRIFKEKLFRD* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00930 342 ProSiteProfiles TPR repeat profile. 21 54 IPR019734 GO:0005515
Pte3g00930 342 Gene3D Tetratricopeptide repeat domain 20 134 IPR011990 GO:0005515
Pte3g00930 342 Pfam Tetratricopeptide repeat 90 121 IPR013105 -
Pte3g00930 342 Pfam TPR repeat 28 68 - -
Pte3g00930 342 SMART tpr_5 55 88 IPR019734 GO:0005515
Pte3g00930 342 SMART tpr_5 21 54 IPR019734 GO:0005515
Pte3g00930 342 SMART tpr_5 89 122 IPR019734 GO:0005515
Pte3g00930 342 ProSiteProfiles TPR repeat profile. 89 122 IPR019734 GO:0005515
Pte3g00930 342 FunFam Stress-induced phosphoprotein 1 20 135 - -
Pte3g00930 342 SUPERFAMILY TPR-like 23 131 IPR011990 GO:0005515
Pte3g00930 342 PANTHER TPR REPEAT CONTAINING PROTEIN 22 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00930 Pte-Chr3 7782453 7786322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00930 24 116 U-box Gene Family AT3G07370 32.258 1.22e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00930 - - qsa:O6P43_003324 543.888