Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00898 ATGCTTTCCAATCACTTCCACAATGGTATTGAAACTGCCAAGTACGTTTGGTCACGCCTGCCGAATCCTGAAAATGGAGAGCATCATGACGAAGCCGTAGGTATTTTGAACACGAGTGGTGGTACTGGAGTTGATAGCCTTGATTATGAAGTAATCGAGAATTTTGCATATCGGGAAGAGCAGGCTCAGAGAGGAAAGCTATATGTCGGGTATTTACTTGTGGTGAAGTGGTTCTTTGCTTTGCTTATTGGCATTGGGACTGGGTTGGCTGCTGTTTTCATTAACATTTCTGTGGAGAACTTTGCTGGATGGAAGTTCTCGGTCACTTTTGATATTATTCAGAAGTCATATATAGCAGGATTTCTTCTATATGTTTTGACCAATTTAGTCTTAGTTTTTTCATCTGCATATATAGTCACTCAATTTGCTCCAGCAGCAGCTGGGTCTGGTATTCCTGAGATTAAGGGTTATTTGAATGGAATTGATATTCATGGTATCCTTCTGCTTAGAACCCTGATTGGCAAGATATTTGGAAGCATTGGTTCAGTTGGAGGTGGGCTTGCCTTAGGAAAAGAAGGCCCTCTTGTTCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAGGGTGGGTCTACCAAGTACCATCTCAATTCAAGATGGTTCCAAGTATTTAAAAGTGATCGGGACCGTCGTGATCTTGTTACCTGTGGGTGTGCAGCTGGAGTTGCCGCTGCCTTCAGAGCTCCTGTTGGTGGTGTGCTGTTTGCATTGGAAGAGGTGACATCTTGGTGGAGAAGTCAACTTATGTGGCGTGTTTTCTTTACTTCTGCTGTGGTGGCTGTTGTGGTTCGTACTGCAATGGGGTGGTGTAGAAGTGGGAAGTGTGGACATTTTGGCTCTGGTGGCTTCATCATTTGGGACGTATCAGATGGTCAAGAAGATTATTCCTTCGAGGAGTTCTTGCCAATGGCTATAATTGGTGTCATCGGCGGTCTACTTGGAGCTCTATTTAATCAGCTCACCTTGTACATGACTTCATGGCGTCGAAATTATCTCCACAAGAAAGGGAATCGAGTGAAGATTATAGAGGCATGTGTTATCTCCGTGATAACATCAGTTATTTCCTTTGGATTGCCTCTTCTAAGAACATGCAGTCCATGCCCTGAAGGAGATCCTGATTCTGGTATTGAATGCCCAAAACGTCCTGGAGTTGATGGGAATTATGTAAATTTCTATTGTAGAAAAGACAATGAGTACAATGATCTTGCAACCATTTTCTTCAATACACAGGATGACGCCATCAGGAATTTGTTCAGTGCAAAAACCATACATGAGTTCAGTGCCCAAAGTTTATTGACATTTTTGGTAATGTTTTATACATTAGCGGTAGTGACATTTGGTACTGCTGTGCCAGCTGGGCAATTTGTTCCTGGGATAATGATAGGGTCAACATATGGACGTCTTGTTGGAATGTTTGTTGTAAGACATTACAAGAGGCTTAACATAGAAGAAGGAACATATGCTTTGCTTGGAGCAGCGTCTTTTCTCGGTGGTTCCATGCGAATGACAGTGTCTCTCTGTGTCATTATGGTTGAAATCACAAATAACTTAAAACTTCTTCCTCTTATTATGCTCGTTCTTCTTATTTCCAAGGCTGTCGGTGATGCTTTTAATGAGGGGCTTTATGAAGAGCAGGCTCGATTGAAAGGTATTCCGCTGCTCGAATCAAGGCCAAAGTACAAAATGAGGAACATAACTGCAAAAGAGGCCTGTGGAAATCAAATGGTTGTATCCTTTCCTCGTGTCGTCAAGGTTGCTGATGTAGTTTCCATTTTGCGTAGCAATGGTCACAATGGTTTCCCAGTGATTGATCACACGAGAGATGGGGAACCCCTTGTAATTGGATTGGTGCTTCGGAGTCACTTACTGGTACTCCTGCAGTCTAAGGTTGATTTCCAGCATAGCCCCATTCCCAGTGGTCCAATTGGTGGATCTAGCCCTATGAGGCACAATTTTGGCGAATTTGCGAAGCCAGTCTCAAGTAAAGGATTATCTATAGATGATATATATCTGAGTCAAGATGACATGGAAATGTACGTAGATCTTACGCCATTTTTAAATCCATCCCCATACATTGTACCAGAAGATATGTCTCTAACCAAGGTATACAATCTTTTCCGACAACTTGGGTTGAGGCATTTATTTGTCGTTCCTCGGCCATCTCGCGTGATTAGTTTGATTACGAGAAAGGATTTGTTGATTGAGGATAATGAGGAGTCTTCTACAGTGGAGCTTCAACCTACTAGTGTAAGGTCATCATAA 2322 0.4251 MLSNHFHNGIETAKYVWSRLPNPENGEHHDEAVGILNTSGGTGVDSLDYEVIENFAYREEQAQRGKLYVGYLLVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSVTFDIIQKSYIAGFLLYVLTNLVLVFSSAYIVTQFAPAAAGSGIPEIKGYLNGIDIHGILLLRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWFQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRTAMGWCRSGKCGHFGSGGFIIWDVSDGQEDYSFEEFLPMAIIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRTCSPCPEGDPDSGIECPKRPGVDGNYVNFYCRKDNEYNDLATIFFNTQDDAIRNLFSAKTIHEFSAQSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVRHYKRLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEEQARLKGIPLLESRPKYKMRNITAKEACGNQMVVSFPRVVKVADVVSILRSNGHNGFPVIDHTRDGEPLVIGLVLRSHLLVLLQSKVDFQHSPIPSGPIGGSSPMRHNFGEFAKPVSSKGLSIDDIYLSQDDMEMYVDLTPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVISLITRKDLLIEDNEESSTVELQPTSVRSS* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00898 773 Pfam CBS domain 707 753 IPR000644 -
Pte3g00898 773 Pfam CBS domain 604 646 IPR000644 -
Pte3g00898 773 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 37 759 - -
Pte3g00898 773 FunFam Chloride channel protein 698 773 - -
Pte3g00898 773 FunFam Chloride channel ClC3 68 385 - -
Pte3g00898 773 Gene3D - 594 754 IPR046342 -
Pte3g00898 773 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte3g00898 773 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte3g00898 773 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte3g00898 773 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte3g00898 773 PRINTS Plant CLC chloride channel signature 422 438 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte3g00898 773 ProSiteProfiles CBS domain profile. 706 762 IPR000644 -
Pte3g00898 773 SUPERFAMILY Clc chloride channel 54 576 IPR014743 -
Pte3g00898 773 CDD ClC_6_like 46 574 - -
Pte3g00898 773 SUPERFAMILY CBS-domain pair 579 753 IPR046342 -
Pte3g00898 773 CDD CBS_pair_voltage-gated_CLC_euk_bac 596 753 - -
Pte3g00898 773 SMART cbs_1 595 647 IPR000644 -
Pte3g00898 773 SMART cbs_1 709 757 IPR000644 -
Pte3g00898 773 Pfam Voltage gated chloride channel 132 554 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte3g00898 773 PRINTS Chloride channel signature 523 542 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte3g00898 773 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte3g00898 773 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte3g00898 773 PRINTS Chloride channel signature 470 490 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte3g00898 773 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte3g00898 773 PRINTS Chloride channel signature 505 521 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte3g00898 773 PRINTS Chloride channel signature 561 575 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte3g00898 773 Gene3D Clc chloride channel 70 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00898 Pte-Chr3 7505199 7513669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00898 1 772 Ion Channels AT5G26240 84.109 0.0 1254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00898 K05016 - qsa:O6P43_021586 1309.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00898 3 7505199 7513669 Pte3g00898 3 7505199 7513669 RCT