Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00893 ATGGATATTCAGGGCGTCGTTCCTGAGAGGAAAGGTCAGAAGAGAAAACTGGAGGTAGAGATCATCGAAGCACACTCAGATCTCTCTTCTGTGTCTGTACCTACCGGTGATGCACGGGAAGCTTTGCTTAGTCAAGTGAGTGCTCAGGTTGACGTACTTACCTCAACGTTCTCTTGGAAAGAAGCCGATCGTGCCGCTGCTAAGCGCGCTACTCATGTAATCGCAGAGCTTGCTAAAAACGAGGATATAGTGTACTTGATAGTAGAAGGAGGTGCTGTTCCGGCTTTGGTGAAGCATCTTGGAGCACCGCCGATTACTGAAGGTTATCGGAATCAAAAGCCATTTGAGCATGAGGTCGAGAAAGGGGCTGCGTTTGCCTTAGGACTTCTTGCTGTCAAGCCTGAGCATCAACACCTCATTGTGGATAATGGTGCATTAACCCATCTTGTGAATTTGTTGAAGAGACTCAAGAATGGTTTTGGATCACGTGCTGCGAATAGTGTGATTCGTAGGGCTGCTGATGCCATCACTAATCTTGCTCATGAAAACAGCATTATTAAAACTCGTGTCAGGATGGAAGGTGGAATTTCTCCACTAGTTGAGCTACTTGATTTCGCAGATGCAAAAGTGCAAAGAGCAGCTGCTGGTGCTCTCCGAACCCTCGCATTTAAAAATGATGAAAATAAAAATCAGATTGTAGAGTGCAATGCTCTCCCCACCCTTATCCTAATGCTCCGTAGTGAAGATGCTGCAATACATTATGAAGCTGTTGGTGTGATAGGAAATCTGGTGCATTCGTCTCCCCATATAAAGAAAGAAGTTCTGCAAGCTGGAGCTTTACAATCTGTTATTGATTTACTCAGTTCGTGTTGCTCAGAAAGCCAAAGAGAGGCAGCCTTGTTACTTGGACAATTTGCTGCAACCGATTCAGATTGTAAGGTTCACATTGTGCAGAGAGGTGCTGTGCCTCCTCTGATTGATATGCTTCAGTCCCCAGACTTTCAGCTTCAAGAAATGTCAGCGTTTGCTTTGGGGAGGTTGGCCCAGACTTGCCTTGCTTCCTTTGTCATCGCCCAACTCTGCCGTATAGCCATCTCGCCCAACTCTGCAAGTCTACGGTATAGCCATCGCACAAGCCTCCGTCCAAGCCATCGACCCAGCCATCTCCCAACTCTGCAACTCTGCAAGTCTGTTGTATACTTGCAAAAGAAATCGTCTCAGTTAGGTATTTTTAATCAATTTTTGCAACTCTGCAAGCAGACCGAATGGATGGCTACAGAACTTCTTCGTGGAGACGAATCGCACAGACGACATTTCACAGAATTGCACAGACGAATTGCACAGAATAGCTGA 1353 0.4612 MDIQGVVPERKGQKRKLEVEIIEAHSDLSSVSVPTGDAREALLSQVSAQVDVLTSTFSWKEADRAAAKRATHVIAELAKNEDIVYLIVEGGAVPALVKHLGAPPITEGYRNQKPFEHEVEKGAAFALGLLAVKPEHQHLIVDNGALTHLVNLLKRLKNGFGSRAANSVIRRAADAITNLAHENSIIKTRVRMEGGISPLVELLDFADAKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPHIKKEVLQAGALQSVIDLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVPPLIDMLQSPDFQLQEMSAFALGRLAQTCLASFVIAQLCRIAISPNSASLRYSHRTSLRPSHRPSHLPTLQLCKSVVYLQKKSSQLGIFNQFLQLCKQTEWMATELLRGDESHRRHFTELHRRIAQNS* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00893 450 SUPERFAMILY ARM repeat 51 351 IPR016024 -
Pte3g00893 450 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 91 145 IPR000225 GO:0005515
Pte3g00893 450 Pfam Armadillo/beta-catenin-like repeat 190 222 IPR000225 GO:0005515
Pte3g00893 450 Pfam Armadillo/beta-catenin-like repeat 225 264 IPR000225 GO:0005515
Pte3g00893 450 Pfam Armadillo/beta-catenin-like repeat 309 348 IPR000225 GO:0005515
Pte3g00893 450 Gene3D - 36 382 IPR011989 -
Pte3g00893 450 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 320 348 IPR000225 GO:0005515
Pte3g00893 450 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 236 278 IPR000225 GO:0005515
Pte3g00893 450 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 194 229 IPR000225 GO:0005515
Pte3g00893 450 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 7 354 IPR044282 -
Pte3g00893 450 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 184 IPR000225 GO:0005515
Pte3g00893 450 SMART arm_5 267 307 IPR000225 GO:0005515
Pte3g00893 450 SMART arm_5 225 265 IPR000225 GO:0005515
Pte3g00893 450 SMART arm_5 80 132 IPR000225 GO:0005515
Pte3g00893 450 SMART arm_5 133 181 IPR000225 GO:0005515
Pte3g00893 450 SMART arm_5 183 223 IPR000225 GO:0005515
Pte3g00893 450 SMART arm_5 309 349 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00893 Pte-Chr3 7420081 7437479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00893 154 348 U-box Gene Family AT2G23140 29.082 9.39e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00893 - - qsa:O6P43_021592 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00893 3 7420081 7437479 Pte3g00893 3 7420081 7437479 RCT