Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00890 ATGGCGACACCTCCTAGCATTGAATCCGTACAGTGCTTTGGACGCAAGAAGACTGCTGTGGCCGTCGCCTACTGCAAAAGAGGCCGTGGCTTGATCAAGATCAATGGCCGTCCTATTGAGCTGGTCGAGCCTGATAGCCTACGATTCAAGGCCTGCGAGCCAATCCTCCTTCTGGGTCGTCATCGTTTTGCTGGCGTCGACATGAGGATCAGAGTCAAGGGAGGAGGTAAGACCTCACAGATCTATGCCATCCGGCAGAGCATCGCAAAGGCATTGGTTGCTTTCTATCAGAAGTATGTTGATGAGCAGAGCAAGAAGGAGATTAAAGACATTCTCGTCAGGTACGACAGGACTCTGCTTGTCGCCGATCCCAGACGCTGCGAGCCTAAGAAGTTCGGTGGTCGTGGTGCCAGAGCCAGGTTCCAGAAGTCTTACCGTTGA 441 0.5306 MATPPSIESVQCFGRKKTAVAVAYCKRGRGLIKINGRPIELVEPDSLRFKACEPILLLGRHRFAGVDMRIRVKGGGKTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00890 146 Pfam Ribosomal protein S9/S16 14 146 IPR000754 GO:0003735|GO:0005840|GO:0006412
Pte3g00890 146 SUPERFAMILY Ribosomal protein S5 domain 2-like 9 146 IPR020568 -
Pte3g00890 146 Gene3D - 3 146 IPR014721 -
Pte3g00890 146 FunFam 40S ribosomal protein S16 3 146 - -
Pte3g00890 146 ProSitePatterns Ribosomal protein S9 signature. 74 92 IPR020574 GO:0003735|GO:0005840|GO:0006412
Pte3g00890 146 PANTHER RIBOSOMAL PROTEIN S9 8 143 IPR000754 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00890 Pte-Chr3 7397105 7399387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00890 1 147 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 85.034 5.38e-90 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00890 K02960 - qsu:111991747 271.166