Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00878 ATGGAAGGAATTGGAAGAAAAAAAAGGGTTTACAAAGGAAAAATCAAAACACTGTCACTGGCTATGCTATATGATTGGGGACTGAGGTTAGGGCAAAGGATCCAAGGGATCCGTCCAAAACAAATACGCAAGACAACACATAAAGTAGGGAATTGGTTTGCTCTTGTGGCGCTCGCAGTAAGGATTCCCAGATTACGACTCACCAACTTGCCAGCTTTCTTGTATTCTAATCACATAAAGACAAACACCCACTTCCTGCCTCGCTATCCCTCACAACTCTTCACACTTTGTCATCGTCCTGTCTACCCTGTCTCTCTTTGCTCAGATCATACCTCGCTCTGTACCAGCAAAGACACAATCGCACGCCTGTTGCTCAAAAATACCACTGCAGCTCGCCGCATATTTGACACCAAAGGTTCAGTACAAATGCAAACATCCCTATCCGCCTACAGAACAGGACAGCTTCCCTTGGTGAGTTTCCAAGGAGGGTTCAGGACAATGGAGTCACTATTTCGCCGGAAATTGGAGAAGGTTGTGTTCGTTGTGGGGGCAACCGGCACCGGAAAGTCCAAACTTGCCATAGACTTGGCTACACGTTTCTCAGCTGAGATTGTCAACTCAGACAAAATGCAAGTCTACAAAGGCTTGGAAGTCGTCACCAATAAGGTCACAGAGGAAGAGTGCCAAGGCGTTCCGCACCATTTGCTAGGCATAGCAGATCCTAACTCAAATTTTACAGCTAATGATTTCTGTCGTCATGCTTCATTGGCCATTGAATCCATTGTCCAAAGGGAGAAGCTCCCAATCATTGCTGGAGGTTCTAATTCCTTCATTGAAGCGCTAGTGAACTATGATTCAGGGCCTGCTGGATTAAGGTATGAGTGTTGTTTTCTCTGGGTGGATGTGTCATGGACTGTGCTTCGTTCATTTCTGCTTAAACGAGTGGATAGGATGATCGAGGCTGGTCTTGTGAACGAGGTGAGAGAAATCTTTGATCCTTTGGCTGATTACACAAGAGGGATCAGACGTGCAATCGGGGTCCCTGAATTGGACAAGTACTTAAGGAGTGAGTCGATTGCTGATGAGAAAACCAAAGCAGAGTACCTTGATGCTGCCATTGCCATGATCAAGAAGAACAACTGCTCTTTGGCTATACGTCAATTACAAAAGATTGAACACCTGAGTAACCTGTGGATGAACTATGTGCGCAGGATTGATGCTACAGAAGCTTTCAAAAAGAGTGGTGAGGAAGCAGAGGGGGCTTGGAATGACCTCGTTTTGGTACCCAGTACAAACATAGTGCATGAATTCCTGCATGGTCAAAATCATCTCACCACCCCATCAAGCCAAAATAGCAGGAGTCATCTTACTCCAATTGTATCAACAGAACCTGTAGTTGCCTGA 1404 0.4558 MEGIGRKKRVYKGKIKTLSLAMLYDWGLRLGQRIQGIRPKQIRKTTHKVGNWFALVALAVRIPRLRLTNLPAFLYSNHIKTNTHFLPRYPSQLFTLCHRPVYPVSLCSDHTSLCTSKDTIARLLLKNTTAARRIFDTKGSVQMQTSLSAYRTGQLPLVSFQGGFRTMESLFRRKLEKVVFVVGATGTGKSKLAIDLATRFSAEIVNSDKMQVYKGLEVVTNKVTEEECQGVPHHLLGIADPNSNFTANDFCRHASLAIESIVQREKLPIIAGGSNSFIEALVNYDSGPAGLRYECCFLWVDVSWTVLRSFLLKRVDRMIEAGLVNEVREIFDPLADYTRGIRRAIGVPELDKYLRSESIADEKTKAEYLDAAIAMIKKNNCSLAIRQLQKIEHLSNLWMNYVRRIDATEAFKKSGEEAEGAWNDLVLVPSTNIVHEFLHGQNHLTTPSSQNSRSHLTPIVSTEPVVA* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00878 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 335 IPR027417 -
Pte3g00878 467 MobiDBLite consensus disorder prediction 444 467 - -
Pte3g00878 467 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 176 438 IPR039657 -
Pte3g00878 467 Gene3D - 176 438 IPR027417 -
Pte3g00878 467 FunFam Adenylate isopentenyltransferase 5, chloroplastic 304 402 - -
Pte3g00878 467 MobiDBLite consensus disorder prediction 444 459 - -
Pte3g00878 467 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 304 402 - -
Pte3g00878 467 Pfam IPP transferase 211 283 - -
Pte3g00878 467 Pfam IPP transferase 292 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00878 Pte-Chr3 7263600 7273562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00878 292 438 C2H2 Transcription Factor Family AT2G27760 32.759 5.40e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00878 K10760 - qsa:O6P43_003439 394.43